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The map label for this gene is rci [H]

Identifier: 83719063

GI number: 83719063

Start: 3569536

End: 3570204

Strand: Direct

Name: rci [H]

Synonym: BTH_I3132

Alternate gene names: 83719063

Gene position: 3569536-3570204 (Clockwise)

Preceding gene: 83720573

Following gene: 83720019

Centisome position: 93.71

GC content: 58.0

Gene sequence:

>669_bases
ATGGTCGCGGCGTGGCGGGATGCCCGACTTGGAGAAGTTTCGTCCGGCACCGCACTGCGGGAGCTTCAGCTTCTTGGACA
TGTCTTCAGCGTAGCGATTCGCGAGTGGGGCGCTCAGCTTCCCAGCAATCCCGTTAGCCTTATCAGGAAGCCACGGTCTG
GCAAGGCCCGAGATCGCGTGCTGACCACATCGGAAAGGACCGCGCTCATCTCGGCTTGCAGTCAGTGTCACAACCCGTGG
ATTAAGCCTGTCGTGATCTTCGCGCTGGAAACCGCTGCACGACGCGGCGAAATCCTTGCACTGACATGGCAAGACGTTGA
TTTGGCACGTCGGACGGCGACCCTACAGATTACGAAGGCAGGGCAACCGCGAAGGATTCCGCTATCCGCAACGTGTGTCA
CCATGCTTGAAGCACTACCGCGCAGCCTTGACGGACGGGTCTTCCCTGTTTCGATGGAAACAGTCAAGCAGGCATACGAA
CGAGCGGTTGCACGGGCCGGTATCACCAACTTCACTTTCCATGATCTGAGACACGATGCACTGACGCGACTGGCAAAGCA
GGGGCTTTCCATTCTGGAACTTCGGGCAATATCCGGTCACGCAACCGCGAACATGCTTCAGCGATACGTGTCGATTGACG
CCGGTGAATTGGCAATGAAGCTCGGCTGA

Upstream 100 bases:

>100_bases
CCCGGTTCAATCGTCACTTCTTCCTTGCGTTTGCGTGGCATAAAGTGGCTCCTTGGCCATCAGTTTATGCCTCACACACA
AACATTCGGATAGGCTCCAG

Downstream 100 bases:

>100_bases
CCGTAGTTGGAACAGCACTGGTTATCGGTCCATCGCCCGCCCGCGCGGTGGATCGATCAGTGTTCGCTCACCCCTTATGC
TTCTTCATCAGGCGGGCGTG

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISACSQCHNPW
IKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKAGQPRRIPLSATCVTMLEALPRSLDGRVFPVSMETVKQAYE
RAVARAGITNFTFHDLRHDALTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELAMKLG

Sequences:

>Translated_222_residues
MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISACSQCHNPW
IKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKAGQPRRIPLSATCVTMLEALPRSLDGRVFPVSMETVKQAYE
RAVARAGITNFTFHDLRHDALTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELAMKLG
>Mature_222_residues
MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRVLTTSERTALISACSQCHNPW
IKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKAGQPRRIPLSATCVTMLEALPRSLDGRVFPVSMETVKQAYE
RAVARAGITNFTFHDLRHDALTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELAMKLG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=224, Percent_Identity=27.6785714285714, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 24418; Mature: 24418

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHE
LTTSERTALISACSQCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKA
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHEEEEEEEEC
GQPRRIPLSATCVTMLEALPRSLDGRVFPVSMETVKQAYERAVARAGITNFTFHDLRHDA
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELAMKLG
HHHHHHCCCCEEEHHHHCCHHHHHHHHHHHCCCHHHHHEECC
>Mature Secondary Structure
MVAAWRDARLGEVSSGTALRELQLLGHVFSVAIREWGAQLPSNPVSLIRKPRSGKARDRV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHE
LTTSERTALISACSQCHNPWIKPVVIFALETAARRGEILALTWQDVDLARRTATLQITKA
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHEEEEEEEEC
GQPRRIPLSATCVTMLEALPRSLDGRVFPVSMETVKQAYERAVARAGITNFTFHDLRHDA
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LTRLAKQGLSILELRAISGHATANMLQRYVSIDAGELAMKLG
HHHHHHCCCCEEEHHHHCCHHHHHHHHHHHCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]