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The map label for this gene is rnfB [H]

Identifier: 83718953

GI number: 83718953

Start: 1097046

End: 1097894

Strand: Reverse

Name: rnfB [H]

Synonym: BTH_I0971

Alternate gene names: 83718953

Gene position: 1097894-1097046 (Counterclockwise)

Preceding gene: 83719691

Following gene: 83719698

Centisome position: 28.82

GC content: 72.56

Gene sequence:

>849_bases
GTGACCGATTCCAAGACCCTCGCGGATCGCATCGAAGATCTGCTTCCCCAGACGCAATGCACGAAGTGCGGCTACGAAGG
CTGTCGTCCGTACGCGGAAGCGATCGCCGCCGGCACCGCAGGCTACGATCAGTGCCCGCCGGGCGGCGCCGAAGGCGTCG
TCCGGCTCGCGACGCTGCTCGGCAAGCCCGTGATCCCGCTCAATCCGGAGCACGGCGTCGAACGCCCGCGCCCCGTCGCG
CTCATCGACGAGCAGCTTTGCATCGGCTGCACACTGTGCATGCAGGCGTGCCCCGTCGACGCGATCGTCGGGGCGCCGAA
GCAAATGCACACGATCGTCGCCGAGCTCTGCACCGGCTGCGACCTGTGCGTGCCGCCGTGCCCCGTCGACTGCATCGCGA
TGATACCTGTGACGGGCGAGCAGACAGGCTGGGACGCGTGGTCGCAACAGCAGGCCGACGCCGCGCGCGCGCGGCACGAT
GCGCGCCTCGCGCGCCAGAAGCGCGAACGCGAGGCGGCCGAGGCGCGGGCGGCGGCGCGCCGCGCCGCAAGCGCCGCCGC
GGCCGCCCCTGCGCCCACCGCAGCCGCCTCCGCGGCGCCGGCCGCCGACGATCCGGAAGCGAAGAAGCGCGCGATCATTG
CCGCCGCGCTCGAACGCGCGCGCAAGAAGAAGGAAGAACTCGCCGCACAGGGCGCGGGGCCGAAGAACACCGAAGGCGTG
AGCGCCGCGGTGCAGGCGCAGATCGATGCGGCCGAAGCGCGGCGGCGCCGTCTCGCCGGGCAGCGCGATCGCGAAGACGA
TGCGCGCCCCGCGAGCGACACGTCGCCGACCCCGAAAACGGAACCGTGA

Upstream 100 bases:

>100_bases
TGCGAAAAATCGGCGATAATCGTCGTTTCGAGAAATATCCCGGCCGCGTTCGAACGCCCGGCTGCCGCGCCGCGCGCACG
CGCCTGCCCACGTAGTCACT

Downstream 100 bases:

>100_bases
CCGCATGAACGCCAACAAACGACGCGCGATCTTCGAAACGCTGCAAAGCCTCAATCCACATCCGACGACCGAGCTCGAAT
ACACGACGCCGTTCGAACTG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTDSKTLADRIEDLLPQTQCTKCGYEGCRPYAEAIAAGTAGYDQCPPGGAEGVVRLATLLGKPVIPLNPEHGVERPRPVA
LIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGEQTGWDAWSQQQADAARARHD
ARLARQKREREAAEARAAARRAASAAAAAPAPTAAASAAPAADDPEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGV
SAAVQAQIDAAEARRRRLAGQRDREDDARPASDTSPTPKTEP

Sequences:

>Translated_282_residues
MTDSKTLADRIEDLLPQTQCTKCGYEGCRPYAEAIAAGTAGYDQCPPGGAEGVVRLATLLGKPVIPLNPEHGVERPRPVA
LIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGEQTGWDAWSQQQADAARARHD
ARLARQKREREAAEARAAARRAASAAAAAPAPTAAASAAPAADDPEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGV
SAAVQAQIDAAEARRRRLAGQRDREDDARPASDTSPTPKTEP
>Mature_281_residues
TDSKTLADRIEDLLPQTQCTKCGYEGCRPYAEAIAAGTAGYDQCPPGGAEGVVRLATLLGKPVIPLNPEHGVERPRPVAL
IDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPVTGEQTGWDAWSQQQADAARARHDA
RLARQKREREAAEARAAARRAASAAAAAPAPTAAASAAPAADDPEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGVS
AAVQAQIDAAEARRRRLAGQRDREDDARPASDTSPTPKTEP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=142, Percent_Identity=51.4084507042254, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29555; Mature: 29423

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSKTLADRIEDLLPQTQCTKCGYEGCRPYAEAIAAGTAGYDQCPPGGAEGVVRLATLL
CCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
GKPVIPLNPEHGVERPRPVALIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGC
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGEQTGWDAWSQQQADAARARHDARLARQKREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAAAAAPAPTAAASAAPAADDPEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGV
HHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
SAAVQAQIDAAEARRRRLAGQRDREDDARPASDTSPTPKTEP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDSKTLADRIEDLLPQTQCTKCGYEGCRPYAEAIAAGTAGYDQCPPGGAEGVVRLATLL
CCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
GKPVIPLNPEHGVERPRPVALIDEQLCIGCTLCMQACPVDAIVGAPKQMHTIVAELCTGC
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCC
DLCVPPCPVDCIAMIPVTGEQTGWDAWSQQQADAARARHDARLARQKREREAAEARAAAR
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAASAAAAAPAPTAAASAAPAADDPEAKKRAIIAAALERARKKKEELAAQGAGPKNTEGV
HHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
SAAVQAQIDAAEARRRRLAGQRDREDDARPASDTSPTPKTEP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA