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The map label for this gene is yiaD [H]

Identifier: 83718754

GI number: 83718754

Start: 3401194

End: 3402129

Strand: Direct

Name: yiaD [H]

Synonym: BTH_I2956

Alternate gene names: 83718754

Gene position: 3401194-3402129 (Clockwise)

Preceding gene: 83718465

Following gene: 83718738

Centisome position: 89.29

GC content: 71.05

Gene sequence:

>936_bases
ATGACGAAGCCGCGCCTGCCCTCCCGCCGCGCTTCCCGTTTCGCGCTCACGCTCGCCGCGCTCGCGCTCGGCGGCGCGCT
CGGCGGCGCCGCGCGCGCCGACAACGTCGGCCCCGCCACCGTCACGCCGATCGACGCGGGCGGCGTATCCGTGAAATCGA
CGCCGCTCGCGGCGCCCGGCGCCGCGGCGAACGGCACGGGCACGGGCGCGATCGTGTCGTCGCCGCCGCCCGCGAACGCG
GCTCCGGGCCAGGTCGTCGCCGGCGGCAAGGTCGCCGACGAGGCGACGAAGGCCGCCGTGCTGCAGCGCCTGCGCGACAC
GTACGGCGCCGCGAACGTCGTCGACCAGATCGAAGTCGGCAACGTCGCGACGCCGCCGAACTGGTCCGCGAACGTCCAGA
AGCTGATCGGCCCGCAACTGAAGCAGATCAGCAAAGGACAGCTGAAGATCGACGGCACGCAGATCGACGTGAAGGGTGAG
GTGCACAACGAGGCGCAGCGGCAGCAGCTCGCGAGCGACATGGCCAACGCGCTGAACCCGACCTACATGATCAAGAACGG
GCTGCGCGTGAGCGCGTCCGAGCAGGGTCTGCTCGACCAGACGCTCGCGAACCGCACGATCGAGTTCGAGACCGGCAGCG
CGACGCTCACGCCGCAAGGCCGCACGATCCTCGACCAGATGGCGGGCGCGCTCGCGAAGATGCCGAACCGGACGGTCGAG
ATCATCGGCCACACCGACAATTCGGGCAATCGCGCGTCGAACATCGCGCTCAGCCAGTCGCGCGCGGACGCGGTGAAGGG
CTACTTGGTGACGAAGGGCATCGCGTCGCAACAGCTGACGACGACGGGCGTCGGCCCCGACCAGCCGATCGCGTCGAACG
ACTCGGCCGACGGGCGCGCGCGCAATCGCCGGATCGAGTTCCGCGCGGGGCAGTAA

Upstream 100 bases:

>100_bases
CATGGGATCAGCAAGCTCGTCAGTTATCTCGAACAACCGCAACTGTCGCTGCGCGTGGGCATCGACACGTTCCGCGAAGC
ATTCACGGGAGCGTGACGCG

Downstream 100 bases:

>100_bases
GCGGCGCGAACGGCGTGCGGCGCGCCGCACGCCCACCCCGTGCCGACGGCGTCCACGAGCGACATCGTCGACATCGGCGA
TATTGGCGTCCTCGCCGCAC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANA
APGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGE
VHNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ

Sequences:

>Translated_311_residues
MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANA
APGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGE
VHNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ
>Mature_310_residues
TKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPGAAANGTGTGAIVSSPPPANAA
PGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVGNVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEV
HNEAQRQQLASDMANALNPTYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVEI
IGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRARNRRIEFRAGQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=43.5643564356436, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787191, Length=113, Percent_Identity=30.9734513274336, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 31936; Mature: 31805

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCCEECCCCCCCCC
AAANGTGTGAIVSSPPPANAAPGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVG
CCCCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
NVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNEAQRQQLASDMANALNP
CCCCCCCCCCHHHHHHCHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHCCC
TYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
CEEEECCCEECCCCCCHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCEEE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRA
EEEECCCCCCCHHHEEEHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCH
RNRRIEFRAGQ
HCCEEEEECCC
>Mature Secondary Structure 
TKPRLPSRRASRFALTLAALALGGALGGAARADNVGPATVTPIDAGGVSVKSTPLAAPG
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECEECCCCCEECCCCCCCCC
AAANGTGTGAIVSSPPPANAAPGQVVAGGKVADEATKAAVLQRLRDTYGAANVVDQIEVG
CCCCCCCCCEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
NVATPPNWSANVQKLIGPQLKQISKGQLKIDGTQIDVKGEVHNEAQRQQLASDMANALNP
CCCCCCCCCCHHHHHHCHHHHHHCCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHCCC
TYMIKNGLRVSASEQGLLDQTLANRTIEFETGSATLTPQGRTILDQMAGALAKMPNRTVE
CEEEECCCEECCCCCCHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCEEE
IIGHTDNSGNRASNIALSQSRADAVKGYLVTKGIASQQLTTTGVGPDQPIASNDSADGRA
EEEECCCCCCCHHHEEEHHHHHHHHHCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCH
RNRRIEFRAGQ
HCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]