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The map label for this gene is ydhO [H]

Identifier: 83718648

GI number: 83718648

Start: 2248751

End: 2249455

Strand: Direct

Name: ydhO [H]

Synonym: BTH_I1982

Alternate gene names: 83718648

Gene position: 2248751-2249455 (Clockwise)

Preceding gene: 83719439

Following gene: 83719945

Centisome position: 59.03

GC content: 65.67

Gene sequence:

>705_bases
ATGCAGCACCGATATCTGACCCAGGCTTGTACGCGCGTCGTCGCCGGGATGTTCGTCGGCGTTCTGATCGCTGCAGCTCC
CGGCGCGTTCGCCGACGAAGTCAGCAGTTCCAGTCAGAATGCGATCAGTTCGGCTCAATCGGAGCCGGCTTCCTCCTCCC
AGAATCTCCAGCAGGTCAGTGCCGCGACGCCCGCGAAGAGCCAGGGTGGCGCGAAGGCGTTCCTGTCGGGCATGGCCGGC
AAGGCGGGCGACGTCGTCGTCGGCGCGCTGAACATGATCGGCGTGCGCTACCGCTGGGGCGGCAACACGCCGGATTCGGG
CCTCGATTGCAGCGGCTTCGTCCGTTATGTGTTCCAGGACACGCTCGGCATGTCGCTGCCGCGTCGCGCGGAGGAAATGA
GCCGCGTCGGCGAGAAGGTGCGCATGAGCGAACTGAAGCCGGGCGACCTCGTGTTCTTCAACACGATGCGCCGCACGTTC
TCGCACGTCGGCATCTATATCGGCGACAACAAGTTCGTGCACTCGCCGTCGACGGGCAGCACGATCCGCGTCGACGATCT
CGACAGCAGCTACTGGGAAAAGCGTTTCACCGGCGCGCGCCGGATCGAGACGCAGTTCTCGACGAAGCCCGACGATCTGC
GCCAGCGCGTGAAGGCGACGATCGGCGACGGCGGCGTCGGCGCGAGCGCGAACGGCAGCAACTGA

Upstream 100 bases:

>100_bases
GAAATTATCAATTCCTTTTGACAAACAAATACTTCGTGGCTAGTATCGACCGAAATTTTTCCGCCAATCAGCTGATTTTC
CAGCGCAAATCCATCGACCA

Downstream 100 bases:

>100_bases
GTCGCGCCCCGATTGGCGCCGGCGGATGCCGGTGTGCCCAAGCCCCGCTCTCCGACGGAAGCGGGGCTTTTGCTTTTGGG
GGCCGTATTCTCGATGTGAC

Product: NLP/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQHRYLTQACTRVVAGMFVGVLIAAAPGAFADEVSSSSQNAISSAQSEPASSSQNLQQVSAATPAKSQGGAKAFLSGMAG
KAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTF
SHVGIYIGDNKFVHSPSTGSTIRVDDLDSSYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVGASANGSN

Sequences:

>Translated_234_residues
MQHRYLTQACTRVVAGMFVGVLIAAAPGAFADEVSSSSQNAISSAQSEPASSSQNLQQVSAATPAKSQGGAKAFLSGMAG
KAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTF
SHVGIYIGDNKFVHSPSTGSTIRVDDLDSSYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVGASANGSN
>Mature_234_residues
MQHRYLTQACTRVVAGMFVGVLIAAAPGAFADEVSSSSQNAISSAQSEPASSSQNLQQVSAATPAKSQGGAKAFLSGMAG
KAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQDTLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTF
SHVGIYIGDNKFVHSPSTGSTIRVDDLDSSYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVGASANGSN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=44.9275362318841, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786421, Length=116, Percent_Identity=44.8275862068966, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=47.7064220183486, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=42.7272727272727, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24959; Mature: 24959

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRYLTQACTRVVAGMFVGVLIAAAPGAFADEVSSSSQNAISSAQSEPASSSQNLQQVS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
AATPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQD
HCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHH
TLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGS
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCC
TIRVDDLDSSYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVGASANGSN
EEEEECCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQHRYLTQACTRVVAGMFVGVLIAAAPGAFADEVSSSSQNAISSAQSEPASSSQNLQQVS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
AATPAKSQGGAKAFLSGMAGKAGDVVVGALNMIGVRYRWGGNTPDSGLDCSGFVRYVFQD
HCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHH
TLGMSLPRRAEEMSRVGEKVRMSELKPGDLVFFNTMRRTFSHVGIYIGDNKFVHSPSTGS
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCEEECCCEEEECCCCCC
TIRVDDLDSSYWEKRFTGARRIETQFSTKPDDLRQRVKATIGDGGVGASANGSN
EEEEECCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]