| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
Click here to switch to the map view.
The map label for this gene is 83718625
Identifier: 83718625
GI number: 83718625
Start: 3671318
End: 3674098
Strand: Direct
Name: 83718625
Synonym: BTH_I3225
Alternate gene names: NA
Gene position: 3671318-3674098 (Clockwise)
Preceding gene: 83719866
Following gene: 83719543
Centisome position: 96.38
GC content: 67.46
Gene sequence:
>2781_bases GTGACCAATTTGAACGATACGCTACGCAATTTTGCGTCGGGGGCGGTCGACTGGAATAAACGTCCGGTCGCGTTGCACTT TGGCGCCGCGCAAGGCGCGCTGGGCCACCTCCTCGCGTTGCAACACGCCAGTGTTCAGGAAGGTCTGATGACCGGGATTG GCGGGCGATTGACCTGTGTTTCGACCCGTCGCGACATCCCACCCGGCGTGTTTCTCGGCATGCCGGTCTCGATCCGGCTC ATTACCGATCGCGGACAGCCGCACATGGTGAACGCGATCATCAGCGACGTCCAGATCGGCCAAAGCGACGGCGAGCTCTG TGTGTACCAGCTGACGGTCTGCGACGCGCTGTCGCTGATGGACAAGCGCACCAATTCGCGGGTCTTCCGAAAGCGCAGCG TCATCGATGTGCTCGCCACGCTGTTCAACGAATGGCAGCAGCGCAGCCCGGCCCTCGCGCGCGCATTCGAATTCGATCTG TCCGGCTTGCGCGCCGATCGCTATCCGCCCCGCGAACTGACCCGGCAAGTCAACGAATCGGATGCGCATTTCGTGCGCCG TCTGCTGCGCCGCGAAGGGATCACCGTGTTCGCGAAGGCGGGGCCGGCGAAGGGCGAACAGCCGTTGCAGGGCGATGCGA CCGTGCACACGCTCGTGTGCTGTGACGAGCCGATGTCGCTGCCGCAAGCGCCGGCCGGCACGGTTCGCTTGCATCCGCGC GACGCCGGCACCGAGCAGCGCGACACGGTCACGCTGTTCGCGCTGCGTCGGCAATTGGTGCCCGGCAAGGCCGGACGCCC GTCGTGGGACTACAAGAAGGCGCGGATCGACGAATCGAGCGTCGCTTCGAGCCTCGATCAGGGCGAGGCGGGCAACGATC TGGCGAAGCTGCTGACCGACATCGCGATCGACATTCCGCACGCGGGCGATTCATGGAGCGATCACGAGCGGCTCACCCGC GCGCGCATGCTCGCGCACGAGTTCGAGGCCGAGCGCTACGACGGCGTTAGCAGCGTGCGGGATCTGGCCGTGGGCGCGTG GATCACGCTGACGGGCGATCCGGACTGGGACAGGCAACTCGCCGACAAGCGCCAGTTCGTGATCACGTCGATCGATCATG ACATCTGGAACAACCTGCCGAAGGGGCTCAATGACCGCGTGCACGCGCTGTTCGCCGCGAGCCGCAATCTCGTGAACGCG CCCGGCGCGCTGCCGGCCGCGCTTGCGAACGACGCGGATACGCGCTACGAGAACACGTTCACCTGCGTGCGCCGCGGCGT GCCGCTTGCGCCCGCGTACGATCCGCAAGCCGATTTGCCGCCCGTGCATCTGCTCACGGGCACGATCGTCGGCGCGGAGG GCGAGGAAGTGTTCTGCGACGAAAACGGCCGGGTGCGCGTGCGGGTGCACGGCCTCGACCCGGCGGACCACGCGCACGCG CAGGGCGCGGGCACCAACGACAACGCGGGCGACAGCGCGCCGATCCGCGTGGCGTCGAGCCTCGCCGGCGCCCATTTCGG CGCATCGTTTCTGCCGCGAGTCGGCATGGAAGTCCTCCTCGGCTGTCTCGGCGGCGATCCGGACCGGTTGGTGATCATCG GCGTGCTCGGTAACGGCGCGAATCCGCCGGCGACGTTCAGCCATGCGGGCGGCTTGCCGGGCAACCGCTACCTGTCCGGC ATCAAGACGAAGGAGATCAAGGGGCAGCGGTACAACCAGCTGCGTCTCGACGACACGCCGAACCAGATCAGCGCGCAACT GGCGAGCGAGCATGCGCATTCGCAGCTCAATCTCGGATACCTGACCCAACCGCGCGAGAACGGTCATGGCAACGACCGCG GCGAGGGCGCGGAGCTGCGTACCGACGCGGCGGCGGCGCTGCGGGCGGCGCAAGGCATTCTGCTGACGACCTACGCGCGC ACGCAGGCGAGCGGCGGGCAACTGGACCGTGACGAGCTGATTCGGTTGCTCGGCGAGTGCTCGGAGCTGTTCAAGGCGCT GGGCGACTACGCGGGGCAGCACGGCGGGCAGGCTGCGGATACGGCCGGCCAGCACGCGGTGGCCGCCGCCTTCAGGAACT GGACGCCGGGCGCGGGCGGCGCCGATGCGCCGCCCGACGGCGGAGATCGCGCGCTGATGGCGTTCGGCGCGCAGGCCGGC TCGGTGAACGTCACGCCGAAGACGCACGTGACGTATGCCGGAGAGAACATCGATCAGGTTGCGCAGCAGCACCTGCAACT GATGAGCGGCCAGCGGCTGAACGCGACGGCCGGGCAGGGCATGCAACTCTTCGCGCGGGGCGCGGGCGTGCAGGCCGTGG CGGGCGAAGGGCCGATGCTGCTGCAGGCGCAAGCCGATACGTTGACGGCGAATGCGCAGAAGGGCGTCAAGATCACGACG AACGAGCACGAGGTGTTCGTGAGCGCGCCGAGGATTCGGCTCGTCGCCGAGGACGGCAGCTACCTCGAGATCGGCAACGG CATCACGCTCGGCACGAACGGCGACATCAAGCTGCTGTCGGCGTCGCACCAGTGGGGCGGGCCGTCGACGGCGCAGGCGG CGAAGACCGCGTTCGACAACCAGCCGACGGATCAGCGTTTCAAGCTGCACTATCCGGGCGAGGACGGCGATTTGCCGGCT GCGGCGAACAAGCCATTCCGGATCACGCTGAACGACGGGCGCGTCATCGAGGGCAAGACCGATGCGAGCGGCCTGACGGA TCTGGTCAAGGACGACGCGATGCGTATCGCGAAGATCGACTATCTGAAACCGAAGCTTTGA
Upstream 100 bases:
>100_bases TCAGCGTTGATAAAATCTACGCGCCGTGGGGAGGGCATCATTTACATCGAGAATCAATACTCCTCGGATTCGAATCCAAG CAGAAACCTGAGAGTCTGCC
Downstream 100 bases:
>100_bases ACCCGGGCGAACGATGAACGGTATCAACGATCAGTGTTTCACCGCCGCCCACGGGGCGGGCGTGACGATGGCGAATCGGC CGGGCGACCGGCCCGTGCCG
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; VgrG Protein; VGR-Like Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Element Vgr Related Protein; Rhs-Family Protein; Replication/Virulence Associated Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; Rhs Protein; Rhs Element Vgr-Related Protein; Vgr Protein; VgrG Family T6SS G
Number of amino acids: Translated: 926; Mature: 925
Protein sequence:
>926_residues MTNLNDTLRNFASGAVDWNKRPVALHFGAAQGALGHLLALQHASVQEGLMTGIGGRLTCVSTRRDIPPGVFLGMPVSIRL ITDRGQPHMVNAIISDVQIGQSDGELCVYQLTVCDALSLMDKRTNSRVFRKRSVIDVLATLFNEWQQRSPALARAFEFDL SGLRADRYPPRELTRQVNESDAHFVRRLLRREGITVFAKAGPAKGEQPLQGDATVHTLVCCDEPMSLPQAPAGTVRLHPR DAGTEQRDTVTLFALRRQLVPGKAGRPSWDYKKARIDESSVASSLDQGEAGNDLAKLLTDIAIDIPHAGDSWSDHERLTR ARMLAHEFEAERYDGVSSVRDLAVGAWITLTGDPDWDRQLADKRQFVITSIDHDIWNNLPKGLNDRVHALFAASRNLVNA PGALPAALANDADTRYENTFTCVRRGVPLAPAYDPQADLPPVHLLTGTIVGAEGEEVFCDENGRVRVRVHGLDPADHAHA QGAGTNDNAGDSAPIRVASSLAGAHFGASFLPRVGMEVLLGCLGGDPDRLVIIGVLGNGANPPATFSHAGGLPGNRYLSG IKTKEIKGQRYNQLRLDDTPNQISAQLASEHAHSQLNLGYLTQPRENGHGNDRGEGAELRTDAAAALRAAQGILLTTYAR TQASGGQLDRDELIRLLGECSELFKALGDYAGQHGGQAADTAGQHAVAAAFRNWTPGAGGADAPPDGGDRALMAFGAQAG SVNVTPKTHVTYAGENIDQVAQQHLQLMSGQRLNATAGQGMQLFARGAGVQAVAGEGPMLLQAQADTLTANAQKGVKITT NEHEVFVSAPRIRLVAEDGSYLEIGNGITLGTNGDIKLLSASHQWGGPSTAQAAKTAFDNQPTDQRFKLHYPGEDGDLPA AANKPFRITLNDGRVIEGKTDASGLTDLVKDDAMRIAKIDYLKPKL
Sequences:
>Translated_926_residues MTNLNDTLRNFASGAVDWNKRPVALHFGAAQGALGHLLALQHASVQEGLMTGIGGRLTCVSTRRDIPPGVFLGMPVSIRL ITDRGQPHMVNAIISDVQIGQSDGELCVYQLTVCDALSLMDKRTNSRVFRKRSVIDVLATLFNEWQQRSPALARAFEFDL SGLRADRYPPRELTRQVNESDAHFVRRLLRREGITVFAKAGPAKGEQPLQGDATVHTLVCCDEPMSLPQAPAGTVRLHPR DAGTEQRDTVTLFALRRQLVPGKAGRPSWDYKKARIDESSVASSLDQGEAGNDLAKLLTDIAIDIPHAGDSWSDHERLTR ARMLAHEFEAERYDGVSSVRDLAVGAWITLTGDPDWDRQLADKRQFVITSIDHDIWNNLPKGLNDRVHALFAASRNLVNA PGALPAALANDADTRYENTFTCVRRGVPLAPAYDPQADLPPVHLLTGTIVGAEGEEVFCDENGRVRVRVHGLDPADHAHA QGAGTNDNAGDSAPIRVASSLAGAHFGASFLPRVGMEVLLGCLGGDPDRLVIIGVLGNGANPPATFSHAGGLPGNRYLSG IKTKEIKGQRYNQLRLDDTPNQISAQLASEHAHSQLNLGYLTQPRENGHGNDRGEGAELRTDAAAALRAAQGILLTTYAR TQASGGQLDRDELIRLLGECSELFKALGDYAGQHGGQAADTAGQHAVAAAFRNWTPGAGGADAPPDGGDRALMAFGAQAG SVNVTPKTHVTYAGENIDQVAQQHLQLMSGQRLNATAGQGMQLFARGAGVQAVAGEGPMLLQAQADTLTANAQKGVKITT NEHEVFVSAPRIRLVAEDGSYLEIGNGITLGTNGDIKLLSASHQWGGPSTAQAAKTAFDNQPTDQRFKLHYPGEDGDLPA AANKPFRITLNDGRVIEGKTDASGLTDLVKDDAMRIAKIDYLKPKL >Mature_925_residues TNLNDTLRNFASGAVDWNKRPVALHFGAAQGALGHLLALQHASVQEGLMTGIGGRLTCVSTRRDIPPGVFLGMPVSIRLI TDRGQPHMVNAIISDVQIGQSDGELCVYQLTVCDALSLMDKRTNSRVFRKRSVIDVLATLFNEWQQRSPALARAFEFDLS GLRADRYPPRELTRQVNESDAHFVRRLLRREGITVFAKAGPAKGEQPLQGDATVHTLVCCDEPMSLPQAPAGTVRLHPRD AGTEQRDTVTLFALRRQLVPGKAGRPSWDYKKARIDESSVASSLDQGEAGNDLAKLLTDIAIDIPHAGDSWSDHERLTRA RMLAHEFEAERYDGVSSVRDLAVGAWITLTGDPDWDRQLADKRQFVITSIDHDIWNNLPKGLNDRVHALFAASRNLVNAP GALPAALANDADTRYENTFTCVRRGVPLAPAYDPQADLPPVHLLTGTIVGAEGEEVFCDENGRVRVRVHGLDPADHAHAQ GAGTNDNAGDSAPIRVASSLAGAHFGASFLPRVGMEVLLGCLGGDPDRLVIIGVLGNGANPPATFSHAGGLPGNRYLSGI KTKEIKGQRYNQLRLDDTPNQISAQLASEHAHSQLNLGYLTQPRENGHGNDRGEGAELRTDAAAALRAAQGILLTTYART QASGGQLDRDELIRLLGECSELFKALGDYAGQHGGQAADTAGQHAVAAAFRNWTPGAGGADAPPDGGDRALMAFGAQAGS VNVTPKTHVTYAGENIDQVAQQHLQLMSGQRLNATAGQGMQLFARGAGVQAVAGEGPMLLQAQADTLTANAQKGVKITTN EHEVFVSAPRIRLVAEDGSYLEIGNGITLGTNGDIKLLSASHQWGGPSTAQAAKTAFDNQPTDQRFKLHYPGEDGDLPAA ANKPFRITLNDGRVIEGKTDASGLTDLVKDDAMRIAKIDYLKPKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99156; Mature: 99025
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLNDTLRNFASGAVDWNKRPVALHFGAAQGALGHLLALQHASVQEGLMTGIGGRLTCV CCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE STRRDIPPGVFLGMPVSIRLITDRGQPHMVNAIISDVQIGQSDGELCVYQLTVCDALSLM ECCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH DKRTNSRVFRKRSVIDVLATLFNEWQQRSPALARAFEFDLSGLRADRYPPRELTRQVNES HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC DAHFVRRLLRREGITVFAKAGPAKGEQPLQGDATVHTLVCCDEPMSLPQAPAGTVRLHPR HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCC DAGTEQRDTVTLFALRRQLVPGKAGRPSWDYKKARIDESSVASSLDQGEAGNDLAKLLTD CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHH IAIDIPHAGDSWSDHERLTRARMLAHEFEAERYDGVSSVRDLAVGAWITLTGDPDWDRQL HEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEECCCCCHHHHH ADKRQFVITSIDHDIWNNLPKGLNDRVHALFAASRNLVNAPGALPAALANDADTRYENTF HCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHH TCVRRGVPLAPAYDPQADLPPVHLLTGTIVGAEGEEVFCDENGRVRVRVHGLDPADHAHA HHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCC QGAGTNDNAGDSAPIRVASSLAGAHFGASFLPRVGMEVLLGCLGGDPDRLVIIGVLGNGA CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC NPPATFSHAGGLPGNRYLSGIKTKEIKGQRYNQLRLDDTPNQISAQLASEHAHSQLNLGY CCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCE LTQPRENGHGNDRGEGAELRTDAAAALRAAQGILLTTYARTQASGGQLDRDELIRLLGEC EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHH SELFKALGDYAGQHGGQAADTAGQHAVAAAFRNWTPGAGGADAPPDGGDRALMAFGAQAG HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC SVNVTPKTHVTYAGENIDQVAQQHLQLMSGQRLNATAGQGMQLFARGAGVQAVAGEGPML EEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEECCCCCEE LQAQADTLTANAQKGVKITTNEHEVFVSAPRIRLVAEDGSYLEIGNGITLGTNGDIKLLS EEECCCEEECCCCCCEEEECCCCEEEEECCEEEEEECCCCEEEECCCEEECCCCCEEEEE ASHQWGGPSTAQAAKTAFDNQPTDQRFKLHYPGEDGDLPAAANKPFRITLNDGRVIEGKT CCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCEEEECCC DASGLTDLVKDDAMRIAKIDYLKPKL CCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TNLNDTLRNFASGAVDWNKRPVALHFGAAQGALGHLLALQHASVQEGLMTGIGGRLTCV CCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE STRRDIPPGVFLGMPVSIRLITDRGQPHMVNAIISDVQIGQSDGELCVYQLTVCDALSLM ECCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH DKRTNSRVFRKRSVIDVLATLFNEWQQRSPALARAFEFDLSGLRADRYPPRELTRQVNES HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC DAHFVRRLLRREGITVFAKAGPAKGEQPLQGDATVHTLVCCDEPMSLPQAPAGTVRLHPR HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCC DAGTEQRDTVTLFALRRQLVPGKAGRPSWDYKKARIDESSVASSLDQGEAGNDLAKLLTD CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCHHHHHHHHH IAIDIPHAGDSWSDHERLTRARMLAHEFEAERYDGVSSVRDLAVGAWITLTGDPDWDRQL HEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEECCCCCHHHHH ADKRQFVITSIDHDIWNNLPKGLNDRVHALFAASRNLVNAPGALPAALANDADTRYENTF HCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHH TCVRRGVPLAPAYDPQADLPPVHLLTGTIVGAEGEEVFCDENGRVRVRVHGLDPADHAHA HHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCC QGAGTNDNAGDSAPIRVASSLAGAHFGASFLPRVGMEVLLGCLGGDPDRLVIIGVLGNGA CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC NPPATFSHAGGLPGNRYLSGIKTKEIKGQRYNQLRLDDTPNQISAQLASEHAHSQLNLGY CCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCE LTQPRENGHGNDRGEGAELRTDAAAALRAAQGILLTTYARTQASGGQLDRDELIRLLGEC EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHH SELFKALGDYAGQHGGQAADTAGQHAVAAAFRNWTPGAGGADAPPDGGDRALMAFGAQAG HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCC SVNVTPKTHVTYAGENIDQVAQQHLQLMSGQRLNATAGQGMQLFARGAGVQAVAGEGPML EEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEECCCCCEE LQAQADTLTANAQKGVKITTNEHEVFVSAPRIRLVAEDGSYLEIGNGITLGTNGDIKLLS EEECCCEEECCCCCCEEEECCCCEEEEECCEEEEEECCCCEEEECCCEEECCCCCEEEEE ASHQWGGPSTAQAAKTAFDNQPTDQRFKLHYPGEDGDLPAAANKPFRITLNDGRVIEGKT CCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCEEEECCC DASGLTDLVKDDAMRIAKIDYLKPKL CCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA