Click here to switch to the map view.

The map label for this gene is fimC [H]

Identifier: 83718580

GI number: 83718580

Start: 984462

End: 986990

Strand: Reverse

Name: fimC [H]

Synonym: BTH_I0865

Alternate gene names: 83718580

Gene position: 986990-984462 (Counterclockwise)

Preceding gene: 83719426

Following gene: 83720476

Centisome position: 25.91

GC content: 72.76

Gene sequence:

>2529_bases
GTGCCGACAGTCCGCCTCGCGCACCGCTCGACGGACCTTGGGCGACATCGACGGTTCGTCGGGCTGACGATCGCGCTCGC
CGCAGCGACGTTCGCCGCAGCGGCGGCGAGCCGGGGCGCGTGCGCGCGAAGCACGGCGGCGCCGACGCAAGCCGGCGACG
GGAGCGTAGATGCGGGCGCGCATGCGGCGGCCGCGCGCGCGGCCGCCGCCTCGGCGAACACCCGGGCCACGCTCGCCGCA
GCCGCCGCGCCGCCCGCGCGCTCCGCGTCGCCCGGCCCGACGACGAACCTGCCCGCCCCCGGCGCCGGCGCGAGCGTCCC
GGCGAGCGACCTGTATCTCGGCGTCTCGCTGAACGGCCAGCCGACTCATTTGATCGTGCACTTCGCCGTCGCCGACGGCC
GCTTCTACGCGAGCCAGGACGACCTGAACGACATCGGCATCGCGACGTCGCGGCTGCGTCAGCCGGCAAACGCGCTCGTC
GCGCTCGATGCGCTCGACGGCCTGCGCTACCGCTACGACGCCGCGCGCCAGACGATCGACCTCGACGCGCCCGACTCGCT
GCGCATCCCGCACACGTTCGACACGCGCGCGCTCGCGCCGACGCTGCCCGCGAGCGCGGGCCGCGGCGCGGTGCTGAACT
ACGACCTCTACGCCCAGACGGCCGACCGCGCGGGCGCGGCGCTCTGGCACGAGGCGCGCTACTTCGATCCGGCGGGCGTC
TTCAGCAGCACGGGCGTCGCGTTCTTTCAGCGCGGCGGCCAACGCTACACGCGCTACGACACGTCATGGAGCATGTCCGA
TCCGAAATCGCTGACGACGACGCAGTTCGGCGACACGATCTCGTCGTCGCTCGCGTGGACGCGCTCGCTGCGCCTCGGCG
GCCTGCAATGGCGCAGCAACTTCGCGCTGCGCCCGGACCTCGTGACGTTCCCTGTGCCGACGCTCGCGGGCACGGCCGTC
GTGCCGTCGACGGTCGATCTGTACGTGAACGGCGTGCGCCAGTTCAGCGGCGACGTGCCGAGCGGCCCGTTCGTCATCAA
CAGCGTGCCGGGCATCACGGGCGCGGGCAACGCGACCGTCGTCACGCGCGACGCGCTCGGGCGCACGATCGCGACGTCGC
TGCCGCTCTACATCGATACGCGGATGCTCGCGCCCGGCCTCGCGAGCTACTCGATCGAGGCGGGCTTCCTGCGGCGCGCG
TGGGGGCTGCGCTCGTTCGACTACGCGCGCCGCCCGGCCGTGAGCGCGACCGCGCGCTACGGCGCGAGCGACAGCTTGAC
CGTCGAGGCGCACGCGGAGGCGACGCCCGGCCTCTACAACGCCGGCGCGGGCGCGCTGGTCCGGCTCGGCGGCGCCGGCG
TCGCGAGCGCGTCGGTCGCGCAGAGCGCGGGGCGCCTCGCGGGCACGCAGGCGGGGCTCGGCTATCAGCTCGTGCTCTCG
CGCTGCTCGATCGACGCGCAAACGCTGCGCGCGTTCCGCGATTACGGCGACCTCGCCGCGCGCGACGGCACGCCGGTGCC
GAGCGCGACCGATCGCATCACGCTGTCGCTGCCGTTCATCCGCTCGCAGACGCTCGCGATCAGCTACATCGGCCTCAAGT
ATCCGGGCCTGCAGTCGTCGCGGATCGGCTCGGTGTCGTACTCGGTCAACGTCGGCAGCCAAGCGTCGATCAACGTCAGC
GCGTTTCAGGACTTCCATCAGCGCGACTCGCGCGGCGTGTTCATGAGCCTGAACGTCGCGCTCGGCAACCGGACGTCGAT
CAACGCGAACGTCGGCCGGCAGAACGGCGAGACGGTCTTCAACGTGAACGCGATGCGCGCGCCCGACTACGGCGGCGGCT
TCGGCTGGAGCGCGCAGGCGGGCGGCGCGGGCGGCATGCGCTACGGCCAGGCGCAGGCGCAATACCTCGGCCGCGCGGGC
GAGGCGACGGCGCTCGCGCAGACGACCGCGGGGCATCAGAACGCGGCGCTCGACGTGACGGGCGCCGTCGTGCTGATGGA
CGGCCGCGCGCTCCTCGCACGGCGCATCGACGACGGCTTCGCGCTCGTGTCGACCGACGCTTCGCCGGGCGTGCCGGTGC
TGCACGAGAATCGCGTGATCGGCACGACCGACGGCAACGGCCATCTGCTGATCCCGGATCTCAACGCGTACCAGAACAAC
CGGATCGGCATCGACACGCTGAAACTGCCGCTCGACGCGCGCGTATCCGGCACGGTCGTCAACGTCGTCCCGCAGTCGCG
ATCGGGCGTGCTCGCGCATTTTGCGATCACGCGCGAACAGTCGGCGTCGATCGCGCTCGAGGACGCGTCCGGCGCGCCGC
TGCCGCCCGGGCTGTCGGTCACGCATCGCGAGAGCGGCGCGAGCACGATCGTCGGCTACGACGGGCTCACGTTCGTCACG
GGCCTCGGGGCCGTCAATCATCTGGAGATAGCGGGCCACGGCAAGCGCTGCGCGGTCGCGTTCGACTACACGCGCCCGGC
CGACGGCTCGCCGACGACGATCGGGCCGCTGACCTGCGACCTGAAGTAG

Upstream 100 bases:

>100_bases
CGCAAGGTGCGCGCGACCATCAACACCCGACCTGTGGAGGCGGACGTGAGCCCGCCTTGACGACACACTCCGAACGCTCC
TACCAACCCCTCGCTCGAAC

Downstream 100 bases:

>100_bases
CGTCCGTGAAACGACGTCCGCGAAGCACCGCCCGTCACGTGAGGCCCGCGAGGCGCCGCCCGCGACGTGACGCCCGTGAA
TTAACGCGCGCGGCCCAACG

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 842; Mature: 841

Protein sequence:

>842_residues
MPTVRLAHRSTDLGRHRRFVGLTIALAAATFAAAAASRGACARSTAAPTQAGDGSVDAGAHAAAARAAAASANTRATLAA
AAAPPARSASPGPTTNLPAPGAGASVPASDLYLGVSLNGQPTHLIVHFAVADGRFYASQDDLNDIGIATSRLRQPANALV
ALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTLPASAGRGAVLNYDLYAQTADRAGAALWHEARYFDPAGV
FSSTGVAFFQRGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRLGGLQWRSNFALRPDLVTFPVPTLAGTAV
VPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSIEAGFLRRA
WGLRSFDYARRPAVSATARYGASDSLTVEAHAEATPGLYNAGAGALVRLGGAGVASASVAQSAGRLAGTQAGLGYQLVLS
RCSIDAQTLRAFRDYGDLAARDGTPVPSATDRITLSLPFIRSQTLAISYIGLKYPGLQSSRIGSVSYSVNVGSQASINVS
AFQDFHQRDSRGVFMSLNVALGNRTSINANVGRQNGETVFNVNAMRAPDYGGGFGWSAQAGGAGGMRYGQAQAQYLGRAG
EATALAQTTAGHQNAALDVTGAVVLMDGRALLARRIDDGFALVSTDASPGVPVLHENRVIGTTDGNGHLLIPDLNAYQNN
RIGIDTLKLPLDARVSGTVVNVVPQSRSGVLAHFAITREQSASIALEDASGAPLPPGLSVTHRESGASTIVGYDGLTFVT
GLGAVNHLEIAGHGKRCAVAFDYTRPADGSPTTIGPLTCDLK

Sequences:

>Translated_842_residues
MPTVRLAHRSTDLGRHRRFVGLTIALAAATFAAAAASRGACARSTAAPTQAGDGSVDAGAHAAAARAAAASANTRATLAA
AAAPPARSASPGPTTNLPAPGAGASVPASDLYLGVSLNGQPTHLIVHFAVADGRFYASQDDLNDIGIATSRLRQPANALV
ALDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTLPASAGRGAVLNYDLYAQTADRAGAALWHEARYFDPAGV
FSSTGVAFFQRGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRLGGLQWRSNFALRPDLVTFPVPTLAGTAV
VPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSIEAGFLRRA
WGLRSFDYARRPAVSATARYGASDSLTVEAHAEATPGLYNAGAGALVRLGGAGVASASVAQSAGRLAGTQAGLGYQLVLS
RCSIDAQTLRAFRDYGDLAARDGTPVPSATDRITLSLPFIRSQTLAISYIGLKYPGLQSSRIGSVSYSVNVGSQASINVS
AFQDFHQRDSRGVFMSLNVALGNRTSINANVGRQNGETVFNVNAMRAPDYGGGFGWSAQAGGAGGMRYGQAQAQYLGRAG
EATALAQTTAGHQNAALDVTGAVVLMDGRALLARRIDDGFALVSTDASPGVPVLHENRVIGTTDGNGHLLIPDLNAYQNN
RIGIDTLKLPLDARVSGTVVNVVPQSRSGVLAHFAITREQSASIALEDASGAPLPPGLSVTHRESGASTIVGYDGLTFVT
GLGAVNHLEIAGHGKRCAVAFDYTRPADGSPTTIGPLTCDLK
>Mature_841_residues
PTVRLAHRSTDLGRHRRFVGLTIALAAATFAAAAASRGACARSTAAPTQAGDGSVDAGAHAAAARAAAASANTRATLAAA
AAPPARSASPGPTTNLPAPGAGASVPASDLYLGVSLNGQPTHLIVHFAVADGRFYASQDDLNDIGIATSRLRQPANALVA
LDALDGLRYRYDAARQTIDLDAPDSLRIPHTFDTRALAPTLPASAGRGAVLNYDLYAQTADRAGAALWHEARYFDPAGVF
SSTGVAFFQRGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRLGGLQWRSNFALRPDLVTFPVPTLAGTAVV
PSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATVVTRDALGRTIATSLPLYIDTRMLAPGLASYSIEAGFLRRAW
GLRSFDYARRPAVSATARYGASDSLTVEAHAEATPGLYNAGAGALVRLGGAGVASASVAQSAGRLAGTQAGLGYQLVLSR
CSIDAQTLRAFRDYGDLAARDGTPVPSATDRITLSLPFIRSQTLAISYIGLKYPGLQSSRIGSVSYSVNVGSQASINVSA
FQDFHQRDSRGVFMSLNVALGNRTSINANVGRQNGETVFNVNAMRAPDYGGGFGWSAQAGGAGGMRYGQAQAQYLGRAGE
ATALAQTTAGHQNAALDVTGAVVLMDGRALLARRIDDGFALVSTDASPGVPVLHENRVIGTTDGNGHLLIPDLNAYQNNR
IGIDTLKLPLDARVSGTVVNVVPQSRSGVLAHFAITREQSASIALEDASGAPLPPGLSVTHRESGASTIVGYDGLTFVTG
LGAVNHLEIAGHGKRCAVAFDYTRPADGSPTTIGPLTCDLK

Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=179, Percent_Identity=28.4916201117318, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 87295; Mature: 87163

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTVRLAHRSTDLGRHRRFVGLTIALAAATFAAAAASRGACARSTAAPTQAGDGSVDAGA
CCCEEEECCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
HAAAARAAAASANTRATLAAAAAPPARSASPGPTTNLPAPGAGASVPASDLYLGVSLNGQ
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
PTHLIVHFAVADGRFYASQDDLNDIGIATSRLRQPANALVALDALDGLRYRYDAARQTID
CCEEEEEEEEECCEEEECCCCCCHHCHHHHHHCCCCHHEEEEEHHCCCHHHHHHHHCEEE
LDAPDSLRIPHTFDTRALAPTLPASAGRGAVLNYDLYAQTADRAGAALWHEARYFDPAGV
CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHCCHHHHHHCCCCCCCCC
FSSTGVAFFQRGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRLGGLQWRSN
CCCCCHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEECCC
FALRPDLVTFPVPTLAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATV
CCCCCCEEECCCCHHCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEE
VTRDALGRTIATSLPLYIDTRMLAPGLASYSIEAGFLRRAWGLRSFDYARRPAVSATARY
EEHHHHCCHHHHCCCEEEECHHHCCCCCCEEECHHHHHHHHCCCCCCHHCCCCCHHHHHC
GASDSLTVEAHAEATPGLYNAGAGALVRLGGAGVASASVAQSAGRLAGTQAGLGYQLVLS
CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RCSIDAQTLRAFRDYGDLAARDGTPVPSATDRITLSLPFIRSQTLAISYIGLKYPGLQSS
HCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCC
RIGSVSYSVNVGSQASINVSAFQDFHQRDSRGVFMSLNVALGNRTSINANVGRQNGETVF
CCCEEEEEEECCCCCEEEHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCCEEE
NVNAMRAPDYGGGFGWSAQAGGAGGMRYGQAQAQYLGRAGEATALAQTTAGHQNAALDVT
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEEEE
GAVVLMDGRALLARRIDDGFALVSTDASPGVPVLHENRVIGTTDGNGHLLIPDLNAYQNN
EEEEEECCHHHHHHHCCCCEEEEECCCCCCCCEEECCEEEEECCCCCEEEEECCCCCCCC
RIGIDTLKLPLDARVSGTVVNVVPQSRSGVLAHFAITREQSASIALEDASGAPLPPGLSV
CCCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEE
THRESGASTIVGYDGLTFVTGLGAVNHLEIAGHGKRCAVAFDYTRPADGSPTTIGPLTCD
EECCCCCCEEEECCCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEECCEEEE
LK
CC
>Mature Secondary Structure 
PTVRLAHRSTDLGRHRRFVGLTIALAAATFAAAAASRGACARSTAAPTQAGDGSVDAGA
CCEEEECCCCCHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
HAAAARAAAASANTRATLAAAAAPPARSASPGPTTNLPAPGAGASVPASDLYLGVSLNGQ
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
PTHLIVHFAVADGRFYASQDDLNDIGIATSRLRQPANALVALDALDGLRYRYDAARQTID
CCEEEEEEEEECCEEEECCCCCCHHCHHHHHHCCCCHHEEEEEHHCCCHHHHHHHHCEEE
LDAPDSLRIPHTFDTRALAPTLPASAGRGAVLNYDLYAQTADRAGAALWHEARYFDPAGV
CCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHCCHHHHHHCCCCCCCCC
FSSTGVAFFQRGGQRYTRYDTSWSMSDPKSLTTTQFGDTISSSLAWTRSLRLGGLQWRSN
CCCCCHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEECCC
FALRPDLVTFPVPTLAGTAVVPSTVDLYVNGVRQFSGDVPSGPFVINSVPGITGAGNATV
CCCCCCEEECCCCHHCCCEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEE
VTRDALGRTIATSLPLYIDTRMLAPGLASYSIEAGFLRRAWGLRSFDYARRPAVSATARY
EEHHHHCCHHHHCCCEEEECHHHCCCCCCEEECHHHHHHHHCCCCCCHHCCCCCHHHHHC
GASDSLTVEAHAEATPGLYNAGAGALVRLGGAGVASASVAQSAGRLAGTQAGLGYQLVLS
CCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RCSIDAQTLRAFRDYGDLAARDGTPVPSATDRITLSLPFIRSQTLAISYIGLKYPGLQSS
HCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCC
RIGSVSYSVNVGSQASINVSAFQDFHQRDSRGVFMSLNVALGNRTSINANVGRQNGETVF
CCCEEEEEEECCCCCEEEHHHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCCEEE
NVNAMRAPDYGGGFGWSAQAGGAGGMRYGQAQAQYLGRAGEATALAQTTAGHQNAALDVT
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCEEEEE
GAVVLMDGRALLARRIDDGFALVSTDASPGVPVLHENRVIGTTDGNGHLLIPDLNAYQNN
EEEEEECCHHHHHHHCCCCEEEEECCCCCCCCEEECCEEEEECCCCCEEEEECCCCCCCC
RIGIDTLKLPLDARVSGTVVNVVPQSRSGVLAHFAITREQSASIALEDASGAPLPPGLSV
CCCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEE
THRESGASTIVGYDGLTFVTGLGAVNHLEIAGHGKRCAVAFDYTRPADGSPTTIGPLTCD
EECCCCCCEEEECCCHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEECCEEEE
LK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]