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The map label for this gene is yqhC [H]

Identifier: 83718549

GI number: 83718549

Start: 184575

End: 185519

Strand: Direct

Name: yqhC [H]

Synonym: BTH_I0153

Alternate gene names: 83718549

Gene position: 184575-185519 (Clockwise)

Preceding gene: 83720785

Following gene: 83720115

Centisome position: 4.85

GC content: 69.95

Gene sequence:

>945_bases
ATGAGCTTCGATCCCCTTTTCCCCGACGGCGGCGCGCGCCTGCAGCGCCGCATCCTCGCGCTGTTCGACCAGCTCGCGCC
GAACGAAGGCTACACGCACGCGCCGATCGACGGCGTGCGCTTCATCCGCTCGAACCGGCCGGTGCCGCGGATGCCGGTGC
TGTACGACCCGAGCATCATCGTCGTGTGTCAGGGGCGCAAGCGCGGCTATGTCGGCGAGCAGACCTTCGTCTACGACGCG
CGGCAGTATCTCGTGCTGTCGGTGCCGCTGCCGTTCGAATGCGAGACGTTCGCGACGCCGGACGAGCCGTTTCTCGCCAT
TTCGATTCGCATCGATCTCGCGGTGATCGCCGAGCTCGCGATCCTGCTCGACGAGACGCACGGCGCGTCGATCAGCGAGC
CGCGCGGCATCTACTCGACGCCGCTTGACGCGCCGCTCGCGGACGCGGTGCTGCGCCTGCTCGAAGCGCTCGCGTCGCCC
GCCGATACGCGCGTGCTCGGGCCGGCGATCATGCGCGAGATCGGCTATCGCGTGCTGACGGGCGCGCAGGGCGACGCGAT
CCGCGCGGCGCTCGCGCAGCAGCATCACTTCGGGCGCGTCGCGCGGGCGCTGCGCAGGATTCATGCGGATCTGAGCGGCG
AGCTCGACGTCGAGACGCTCGCGAGCGAAGCGGGGATGAGCCTCGCCGTGTTCCATGCGCAGTTCAAGAGCGTGACGGCA
AGCTCGCCGATGCAGTACGTGAAGGCGACGCGGCTCCATCACGCGCGGCTGATGATGGTGCAGGACGGGTTGAACGCGGG
CGCGGCGGCGGCGCGAGTCGGCTATGCGAGCGCGTCGCAGTTCAGCCGCGAGTTCAAGCGGTTGTTCGGGCGCAGCCCGA
GCGACGAAGTGCGCTGGGTGCAGGCGGGCGGCCGGCAGCCCGCCGGGCTCGACACGGGAGAGTGA

Upstream 100 bases:

>100_bases
GGTTTGCCTATTTCTCTTGAACTTCGGGCGAAGCGCGGAAAAAAGGCCTGACCGGTGCTAGATTGCAAGCCTGTTTCTCT
TGCAGCACGAAGGAAGTCCG

Downstream 100 bases:

>100_bases
TCGCCGGCAGCGGGGCGCGGCGGCGAATCGCGTGTTCGGCGCGCGGGCGGGGCGATTGACGCTGGGGGCGCTCGCGAACC
GGTATGCGAACCGCCTGCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSFDPLFPDGGARLQRRILALFDQLAPNEGYTHAPIDGVRFIRSNRPVPRMPVLYDPSIIVVCQGRKRGYVGEQTFVYDA
RQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASISEPRGIYSTPLDAPLADAVLRLLEALASP
ADTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
SSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPAGLDTGE

Sequences:

>Translated_314_residues
MSFDPLFPDGGARLQRRILALFDQLAPNEGYTHAPIDGVRFIRSNRPVPRMPVLYDPSIIVVCQGRKRGYVGEQTFVYDA
RQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASISEPRGIYSTPLDAPLADAVLRLLEALASP
ADTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
SSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPAGLDTGE
>Mature_313_residues
SFDPLFPDGGARLQRRILALFDQLAPNEGYTHAPIDGVRFIRSNRPVPRMPVLYDPSIIVVCQGRKRGYVGEQTFVYDAR
QYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELAILLDETHGASISEPRGIYSTPLDAPLADAVLRLLEALASPA
DTRVLGPAIMREIGYRVLTGAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTAS
SPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWVQAGGRQPAGLDTGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=281, Percent_Identity=44.4839857651246, Blast_Score=248, Evalue=3e-67,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34249; Mature: 34117

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDPLFPDGGARLQRRILALFDQLAPNEGYTHAPIDGVRFIRSNRPVPRMPVLYDPSII
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCEE
VVCQGRKRGYVGEQTFVYDARQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELA
EEECCCCCCCCCCHHHEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
ILLDETHGASISEPRGIYSTPLDAPLADAVLRLLEALASPADTRVLGPAIMREIGYRVLT
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
GAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
SSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWV
CCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHE
QAGGRQPAGLDTGE
ECCCCCCCCCCCCC
>Mature Secondary Structure 
SFDPLFPDGGARLQRRILALFDQLAPNEGYTHAPIDGVRFIRSNRPVPRMPVLYDPSII
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCEE
VVCQGRKRGYVGEQTFVYDARQYLVLSVPLPFECETFATPDEPFLAISIRIDLAVIAELA
EEECCCCCCCCCCHHHEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
ILLDETHGASISEPRGIYSTPLDAPLADAVLRLLEALASPADTRVLGPAIMREIGYRVLT
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
GAQGDAIRAALAQQHHFGRVARALRRIHADLSGELDVETLASEAGMSLAVFHAQFKSVTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEHHHHHHHHHC
SSPMQYVKATRLHHARLMMVQDGLNAGAAAARVGYASASQFSREFKRLFGRSPSDEVRWV
CCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHE
QAGGRQPAGLDTGE
ECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]