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The map label for this gene is tdcF [C]

Identifier: 83718538

GI number: 83718538

Start: 622620

End: 623006

Strand: Direct

Name: tdcF [C]

Synonym: BTH_I0547

Alternate gene names: 83718538

Gene position: 622620-623006 (Clockwise)

Preceding gene: 83719564

Following gene: 83719826

Centisome position: 16.35

GC content: 65.89

Gene sequence:

>387_bases
ATGAAGCGATATGGCGTGGGCGAAGCAAAGGGCACGGGCGGGCAGGTGATGCCGTTCGCGCGGGCGGTCGAGGCGGACGG
GTGGCTGTACGTGTCCGGCCAGACGCCGATGGTGAACGGCGAGGTCGTCGAGGGCGGGATCGTCACGCAGTCGAAGCAGG
CGATCGAGAACGTGATCGCGATCCTGAAGGAAGCCGGCTACGGCCTCGAGCACGTCGTGCGCTGCGGCGTGTGGCTCGAC
GACGCGCGCGATTTCGCATCGTTCAACAAGGTCTTCATCTCGTACTTCGGCGAGCACCCGCCCGCCCGCGCGTGCGTGCA
GTCGAGCATGGTGATCGACTGCAAGGTCGAAGTCGACTGCATCGCCTACAAGGCGCCGGCGAAGTGA

Upstream 100 bases:

>100_bases
TTCGGCGCGCGCGATCGAACGGATGCGCGTGGGCCGGCGACCGAACGTCGCGCATCGCGCGGGCGGCGCGCGTTGTCAAA
CGAAACGAAGGAGTGAAACG

Downstream 100 bases:

>100_bases
TGCGGCGCGCGGCGGGCGCGCCGCGTTCATTAGGCGGCTGAGCGAAAGACGGGGTCCCGGCGGGGCCCCGTTTTTTCTTG
GAAAGCGCGGCGCGGCGAAT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLD
DARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIAYKAPAK

Sequences:

>Translated_128_residues
MKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLD
DARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIAYKAPAK
>Mature_128_residues
MKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIAILKEAGYGLEHVVRCGVWLD
DARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDCIAYKAPAK

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=32.7433628318584, Blast_Score=69, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=127, Percent_Identity=32.2834645669291, Blast_Score=84, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=32.3529411764706, Blast_Score=74, Evalue=7e-15,
Organism=Drosophila melanogaster, GI19921376, Length=110, Percent_Identity=38.1818181818182, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13831; Mature: 13831

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIA
CCCCCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCEEEECCEEECHHHHHHHHHH
ILKEAGYGLEHVVRCGVWLDDARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDC
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEEEE
IAYKAPAK
EEEECCCC
>Mature Secondary Structure
MKRYGVGEAKGTGGQVMPFARAVEADGWLYVSGQTPMVNGEVVEGGIVTQSKQAIENVIA
CCCCCCCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCCEEEECCEEECHHHHHHHHHH
ILKEAGYGLEHVVRCGVWLDDARDFASFNKVFISYFGEHPPARACVQSSMVIDCKVEVDC
HHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEEEE
IAYKAPAK
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]