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The map label for this gene is intB [H]

Identifier: 83718523

GI number: 83718523

Start: 1049369

End: 1050685

Strand: Reverse

Name: intB [H]

Synonym: BTH_I0928

Alternate gene names: 83718523

Gene position: 1050685-1049369 (Counterclockwise)

Preceding gene: 83718788

Following gene: 83720192

Centisome position: 27.58

GC content: 61.12

Gene sequence:

>1317_bases
TTGCTCTGCGGGGCTTTTTGCTGCCATCATTGCCCAAGACTGCCCAGTACAAGCCAAGCACCTTGGGGGTATCAGTGGGG
ATATACCCCGAAGTGCTCGGCGCCGATACCCCAACGCAAAATGCCGAAGCAAACCGATCCTCTCACTGACTTGAAGGTGC
GCCGCGCGAAGCCTGCCGAGCAGCCTTACCGTCTTGCTGACGGCAAGGGGCTTTATCTCCAGGTCATGCCGAACGGCTCC
CGGTACTGGCGCATGAAGTATCGGTTCGATGGAAAAGAAAAGCTCGCGTCGTTCGGCGTCTACCCCGAAGTGTCGTTGGC
CCAGGCACGACAAGCCTGTCTCGCTGCACGGAAGCTGTTGGCCGCGGGAACCGACCCGACCGAGCAGAAGCGCGAGATCA
AGCGGGCCCGGGCTATCGAGGCGTCATCGTCCTTCGAAGCCGTCGCGCGGGAGTGGTTCGAGTCGCAGAAAGATGGCTGG
ACGGAGGTCTACGCAAACAAGGTGATTAATTCGCTTGAGGTCGACGCGTTCCCGCGGATCGGCTCCAAGCCGCTGCGCGA
CATTGAGGCGCCTGACATGCTTGAGATCGTGCGAGCGATCGAGGCACGGGGCGTTCGTGAAACAGCTAAGCGGGTACTGC
AGCGATCGCGGGCCGTCTTCCAGTACGGCATCATGACCGGGCGATGCTCACGCAATCCTGCTGCCGACATCGATGCCGAA
ACCGTTCTGAAGAAGGGCCAGGGCGTCAAGCACATGGCACGCGTGAAGCCCGTCGAAATCCCGCAGCTCATGCGCGACAT
TGCCGCCTACTCCGGCGATCGGGTCACGCAACTCGCCCTTCGGTTCATGGCACTGACCTTCACGCGAACAACCGAGATGA
TCAATGCCGAATGGGACGAGTTTGACGAGCGTGCGGCCGAATGGCGTATCCCGCCCGATCGAATGAAGATGCGCGATCCG
CACATCGTGCCGCTGTCGCGACAAGCGCTAGAGGTGCTTGCCGCCTTGCGCGAGCTCAATGGCAACCAACGGCTTGTGTT
CTACAGCGTCCAGGGCCGAAGCCACATCTCGAACAACACGATGCTCTATGCGCTCTACCGCATGGGCTACAAGTCGCGGA
TGACGGGGCACGGCTTTCGCGGCTTGGCCGCGACCGTGCTTCGCGAGCTCGGTTACAGCCGGGACGTCGTCGACCGCCAA
CTCGCCCACGCAGAGCGAAACCAGGTCACCGCAGCTTACGTACACGCGGAATACTTGCCCGAGCGCCGGAAGATGATGCA
GCACTGGGCTGACTATCTCACCCAAACAGCCAATTGA

Upstream 100 bases:

>100_bases
CAAGCGCCTCCTAAGCGCTAGATACAGGTTCGATTCCTGTCGGGGGGACCAGCTAGGTTCCCAAAGCCTCCCAAGATTTC
CCAAAAAGCCCCGCAAAGCC

Downstream 100 bases:

>100_bases
CGGGGCAGGAAAATGGACGAGCAGACCGCACGAACGATTCTTCGCCAAGCCGACGGACACATCGATTGGAATAACGCTCG
CGATTGCCCAGCGTGGCATC

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MLCGAFCCHHCPRLPSTSQAPWGYQWGYTPKCSAPIPQRKMPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGS
RYWRMKYRFDGKEKLASFGVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGW
TEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTGRCSRNPAADIDAE
TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDP
HIVPLSRQALEVLAALRELNGNQRLVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQ
LAHAERNQVTAAYVHAEYLPERRKMMQHWADYLTQTAN

Sequences:

>Translated_438_residues
MLCGAFCCHHCPRLPSTSQAPWGYQWGYTPKCSAPIPQRKMPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGS
RYWRMKYRFDGKEKLASFGVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGW
TEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTGRCSRNPAADIDAE
TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDP
HIVPLSRQALEVLAALRELNGNQRLVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQ
LAHAERNQVTAAYVHAEYLPERRKMMQHWADYLTQTAN
>Mature_438_residues
MLCGAFCCHHCPRLPSTSQAPWGYQWGYTPKCSAPIPQRKMPKQTDPLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGS
RYWRMKYRFDGKEKLASFGVYPEVSLAQARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGW
TEVYANKVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTGRCSRNPAADIDAE
TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTFTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDP
HIVPLSRQALEVLAALRELNGNQRLVFYSVQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQ
LAHAERNQVTAAYVHAEYLPERRKMMQHWADYLTQTAN

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=396, Percent_Identity=36.8686868686869, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1788690, Length=393, Percent_Identity=35.8778625954198, Blast_Score=248, Evalue=6e-67,
Organism=Escherichia coli, GI145693166, Length=390, Percent_Identity=37.6923076923077, Blast_Score=247, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 50076; Mature: 50076

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCGAFCCHHCPRLPSTSQAPWGYQWGYTPKCSAPIPQRKMPKQTDPLTDLKVRRAKPAE
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
QPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSLAQARQACLAARKLL
CCCEECCCCCEEEEEECCCCEEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYANKVINSLEVDAFPRI
HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTGRCSRNPAADIDAE
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHH
TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTFTRTTEMINAEWDE
HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
FDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQRLVFYSVQGRSHISNNT
HHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
MLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLAHAERNQVTAAYVHAEYLP
HHHHHHHHCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
ERRKMMQHWADYLTQTAN
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCGAFCCHHCPRLPSTSQAPWGYQWGYTPKCSAPIPQRKMPKQTDPLTDLKVRRAKPAE
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
QPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSLAQARQACLAARKLL
CCCEECCCCCEEEEEECCCCEEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYANKVINSLEVDAFPRI
HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTGRCSRNPAADIDAE
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCHH
TVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTFTRTTEMINAEWDE
HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
FDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQRLVFYSVQGRSHISNNT
HHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
MLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLAHAERNQVTAAYVHAEYLP
HHHHHHHHCHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
ERRKMMQHWADYLTQTAN
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]