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The map label for this gene is rbsB [H]

Identifier: 83718490

GI number: 83718490

Start: 2785890

End: 2786840

Strand: Reverse

Name: rbsB [H]

Synonym: BTH_I2435

Alternate gene names: 83718490

Gene position: 2786840-2785890 (Counterclockwise)

Preceding gene: 83719605

Following gene: 83721377

Centisome position: 73.16

GC content: 66.35

Gene sequence:

>951_bases
ATGATGCTTATCGCTTCCTCGACGCCGCTTTCCGGCAACCGGGCCGCGCGCATGCTGCGCGCCGCGGCGCTCGCGCTTTT
CTGCGCCGCAGGTGCGGGCGTCGCGCACGCGGCGCCGCTGAAGATCGGCATGACGTTCCAGGAGCTGAACAACCCGTACT
TCGTGACGATGCAAAAGGCGCTCAACGAAGCGGCCGCGTCGATCGGCGCGCAGGTGATCGTCACCGACGCGCATCACGAC
GTCAGCAAGCAGGTGAGCGACGTCGAGGACATGCTGCAGAAGAAGATCGACATCCTGCTCGTGAATCCGACCGATTCGAC
AGGCATCCAGTCGGCCGTCGTGTCGGCGAAGAAGGCGGGCGCGGTCGTCATCGCGGTGGACGCGAACGCGAACGGCCCGG
TCGATGCGTTCGTCGGCTCGAAGAACTTCGACGCGGGCGCGATGTCGTGCGACTACCTCGCGAAGGCGATCGGCGGCAGC
GGCGAGGTCGCGATCCTCGACGGCATCCCGGTCGTGCCGATTCTCGAGCGCGTGCGCGGCTGCCGCGCGGCGCTCGCGAA
ATTCCCGAACGTGAAGATCGTCGACGTGCAGAACGGCAAGCAGGAGCGCGCGAGCGCGCTCACCGTCACCGAGAACATGA
TCCAGGCGCACCCGTTGCTGAAGGGCGTGTTCAGCGTCAACGACGGCGGCTCGATGGGCGCGCTGTCCGCGATCGAGGCA
TCGGGCAAGGACATCAAGCTGACGAGCGTCGACGGCGCGCCGGAGGCGATCGCCGCGATGCAGAAGCCGAACTCGAAGCT
CATCGAAACGTCCGCGCAGTTTCCGCGCGACCAGATCCGCCTCGCGATCGGCATCGGGCTCGCGAAGAAGTGGGGCGCCC
ATGTGCCGAAGGCGATTCCGGTCGACGTGAAGCTGATCGACAGGGGCAACGCGAAGACCTTCAGTTGGTGA

Upstream 100 bases:

>100_bases
CCGGCCCGCGCTCCCGAGCAACCCAGCCCAAAACGCGTCGTGAGGCGCGCCGCTTTCGCGGCGTGCGGGGCGCGCTCATA
CCTAGAAAACGGAGACAACC

Downstream 100 bases:

>100_bases
GCGGGCGCAACGACGCGGCCGGCGACATGGGCGACGGCATGGACGAAGCGAGTGACGCGCGCCGCGCCGCGACGGATGCG
GAGGATGCGGCGAACGTGAC

Product: ribose ABC transporter periplasmic ribose-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MMLIASSTPLSGNRAARMLRAAALALFCAAGAGVAHAAPLKIGMTFQELNNPYFVTMQKALNEAAASIGAQVIVTDAHHD
VSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVIAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGS
GEVAILDGIPVVPILERVRGCRAALAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEA
SGKDIKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIPVDVKLIDRGNAKTFSW

Sequences:

>Translated_316_residues
MMLIASSTPLSGNRAARMLRAAALALFCAAGAGVAHAAPLKIGMTFQELNNPYFVTMQKALNEAAASIGAQVIVTDAHHD
VSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVIAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGS
GEVAILDGIPVVPILERVRGCRAALAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEA
SGKDIKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIPVDVKLIDRGNAKTFSW
>Mature_316_residues
MMLIASSTPLSGNRAARMLRAAALALFCAAGAGVAHAAPLKIGMTFQELNNPYFVTMQKALNEAAASIGAQVIVTDAHHD
VSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVIAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGS
GEVAILDGIPVVPILERVRGCRAALAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEA
SGKDIKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIPVDVKLIDRGNAKTFSW

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=300, Percent_Identity=33.6666666666667, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790526, Length=301, Percent_Identity=29.5681063122924, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790674, Length=205, Percent_Identity=26.8292682926829, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32830; Mature: 32830

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLIASSTPLSGNRAARMLRAAALALFCAAGAGVAHAAPLKIGMTFQELNNPYFVTMQKA
CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCEEEEHHHH
LNEAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAG
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
AVVIAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGSGEVAILDGIPVVPILERVRG
EEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
CRAALAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEA
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHC
SGKDIKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIP
CCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHCCHHHEEEEEEECHHHHHCCCCCCCCC
VDVKLIDRGNAKTFSW
CEEEEEECCCCCCCCC
>Mature Secondary Structure
MMLIASSTPLSGNRAARMLRAAALALFCAAGAGVAHAAPLKIGMTFQELNNPYFVTMQKA
CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCEEEEHHHH
LNEAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAG
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC
AVVIAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGSGEVAILDGIPVVPILERVRG
EEEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
CRAALAKFPNVKIVDVQNGKQERASALTVTENMIQAHPLLKGVFSVNDGGSMGALSAIEA
HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHC
SGKDIKLTSVDGAPEAIAAMQKPNSKLIETSAQFPRDQIRLAIGIGLAKKWGAHVPKAIP
CCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHCCHHHEEEEEEECHHHHHCCCCCCCCC
VDVKLIDRGNAKTFSW
CEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]