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The map label for this gene is hofQ [C]

Identifier: 83718419

GI number: 83718419

Start: 2900156

End: 2901481

Strand: Reverse

Name: hofQ [C]

Synonym: BTH_I2542

Alternate gene names: 83718419

Gene position: 2901481-2900156 (Counterclockwise)

Preceding gene: 83719123

Following gene: 83721217

Centisome position: 76.17

GC content: 69.46

Gene sequence:

>1326_bases
ATGAAAAATAAACTGATTGCATGGGCGGTGGCGTTTGGCGTGTTGCTGTCGTTCGCCGCGCGCGCGGCCGAGATGGGGAC
GATCGAGCTCGCGACGGGCGCGCAGCGGCAGATCGCCGTCGGGCGCGGCGTGCAGCGGGTCGCGATAGGCGATCCGAGCG
TCGCCGACGTGGTCGTCATCAAGGGCGGGCGCGGCGGCGTGCTGCTCGTCGCGAAGGCGGCCGGCTCGACGAACCTGATG
GTGTGGGAGCGCGGCCGCGACGAGCCCTCGGTCTATACGGTCAACGTCGCGAGCGGCGCGGCGCGCGCGCTGCTCGACGG
CGGCTCGCCGAGCGTGAAGGCGTACAACGGCACGGCGGTCGTGTCCGGCTCGGCCGCGACGCTCGACGCGCATGCGCGCG
CGCTCGCCGTCGGCAAGGGGATGGCGGGCAAGGACGGCGGCGTCGTCGACGCGTCGACAGTCGGCGGCAAGAACGTCGTG
CAGGTGGACGTGCGCGTCGTCGAGTTCAGCCGCTCGGTGCTCAAGCAGGCGGGCCTGAATTTCTTCAAGCAGAGCAACGG
CTTCACGTTCGGCTCGTTCGCGCCCGCCGGCCTCGCGTCGGTGACGGGCGGCGGCACGTCGTCGATGTCGGTGTCGGCGA
ACATTCCGATCGCGTCCGCGTTCAATCTCGTCGTCGGTTCCGCGACGCGCGGCCTGTTCGCCGATCTGTCGATCCTCGAG
GCGAACAACCTCGCGCGCGTGCTCGCGCAGCCGACGCTCGTCGCGCTGTCCGGGCAGAGCGCGAGCTTCCTCGCGGGCGG
CGAGATTCCGGTGCCGGTGCCGCAGTCGCTCGGCACGATCTCGATCGACTGGAAGCCGTACGGCGTGGGCCTCACGCTGA
CGCCGACCGTGCTGAGCCCGCGCCGGATCGCGCTGAAGGTCGCGCCGGAATCGAGCCAGCTCGACTTCGTCCATTCGATC
ACGATCAACGGCGTGACGGTGCCCGCGCTCACGACGCGCCGCGCGGACACGACGGTCGAGCTGGGCGATGGGGAGAGCTT
CGTGATCGGCGGGCTGATCGACCGCGAGACGACCTCGAACGTCGACAAGGTGCCGTTCCTCGGCGATCTGCCGATCATCG
GCACGTTTTTCAAGCACCTCAGTTATCAGCAGAACGACAAGGAACTCGTGATCATCGTGACGCCGCATCTCGTCGCGCCG
ATCGCGAAGAACGCGTCGCTGCCCGCGACGCCCGGCGAGTTGTCCGAGCAGCGCGACGGGCCGGTGTGGCGGTCGTATCT
CGGCGGCGTGCTGTCGCCGGACGCGGGGCCGGGGTTCTCGAAATGA

Upstream 100 bases:

>100_bases
ATCCGGGGTGGGCGGGCCGAGACGCTCGCCTATTGATCGACATAGCGGTTTCGAACAGTGACGGCAGGGAGATGGCCGGC
TCGCGCCGGTCTCCGACACG

Downstream 100 bases:

>100_bases
GCGCGCGAGGCCACGACGGCGCACGCGCGAGCGCCGCGACGCGGCGCGCAACCGGAATGCATCAATATGAACGCGAGAAC
ATTATCCTTGGCTGAGCCCG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKNKLIAWAVAFGVLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKAAGSTNLM
VWERGRDEPSVYTVNVASGAARALLDGGSPSVKAYNGTAVVSGSAATLDAHARALAVGKGMAGKDGGVVDASTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Sequences:

>Translated_441_residues
MKNKLIAWAVAFGVLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKAAGSTNLM
VWERGRDEPSVYTVNVASGAARALLDGGSPSVKAYNGTAVVSGSAATLDAHARALAVGKGMAGKDGGVVDASTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK
>Mature_441_residues
MKNKLIAWAVAFGVLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKAAGSTNLM
VWERGRDEPSVYTVNVASGAARALLDGGSPSVKAYNGTAVVSGSAATLDAHARALAVGKGMAGKDGGVVDASTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=171, Percent_Identity=35.672514619883, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082242, Length=168, Percent_Identity=29.7619047619048, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 45224; Mature: 45224

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKLIAWAVAFGVLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVI
CCCCEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHCCCEEEEEECCCCCEEEEEE
KGGRGGVLLVAKAAGSTNLMVWERGRDEPSVYTVNVASGAARALLDGGSPSVKAYNGTAV
ECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCEEE
VSGSAATLDAHARALAVGKGMAGKDGGVVDASTVGGKNVVQVDVRVVEFSRSVLKQAGLN
EECCCEEEHHHHEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEEHHHHHHHHHHCCH
FFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
HEECCCCEEECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSP
CCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCC
RRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSN
CEEEEEECCCCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEEEEEECCCCCCC
VDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDG
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCHHCCCC
PVWRSYLGGVLSPDAGPGFSK
CHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNKLIAWAVAFGVLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVI
CCCCEEHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHCCCEEEEEECCCCCEEEEEE
KGGRGGVLLVAKAAGSTNLMVWERGRDEPSVYTVNVASGAARALLDGGSPSVKAYNGTAV
ECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCEEE
VSGSAATLDAHARALAVGKGMAGKDGGVVDASTVGGKNVVQVDVRVVEFSRSVLKQAGLN
EECCCEEEHHHHEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEEEEHHHHHHHHHHCCH
FFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
HEECCCCEEECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSP
CCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCC
RRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSN
CEEEEEECCCCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEEEEEECCCCCCC
VDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDG
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCHHCCCC
PVWRSYLGGVLSPDAGPGFSK
CHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]