BacMap

Definition	Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession	NC_007643
Length	4,352,825

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The map label for this gene is fadB1 [H]

Identifier: 83595130

GI number: 83595130

Start: 4351096

End: 4351872

Strand: Direct

Name: fadB1 [H]

Synonym: Rru_A3801

Alternate gene names: 83595130

Gene position: 4351096-4351872 (Clockwise)

Preceding gene: 83595129

Following gene: 83595131

Centisome position: 99.96

GC content: 62.42

Gene sequence:

>777_bases
ATGGCCTACGAAAACATTCTCGTGGAAACCAACGGTAAAGTGGGCATCGTCACGCTCAACCGGCCCAAGGCGCTCAATGC
CCTTTCGGCCGGGTTGGTCCGCGATCTCGGCGCCGCCCTCGACGCCTTCGAGGCCGATGTGAACGTCCACGTCATCGTCC
TGACCGGCTCGGACAAGGCTTTCGCCGCCGGCGCCGATATCAAGGAGATGGCCGAAAAGTCCTATATGGACGCCTATCTC
GAAGACTTCATCACCAAGGGCTGGGAGCGGGTGACCACCTGCCGCAAGCCGATCATCGCCGCCGTGGCCGGATTCGCCCT
GGGCGGTGGCTGCGAGATGGCGATGATGTGCGATTTCATCATCGCCGCCCAGAACGCCAAATTCGGCCAGCCCGAAATCA
ACCTGGGCACCCTGCCCGGCGCCGGCGGCACCCAGCGTCTGACCCGCTTCGTCGGCAAGTCCAAGGCGATGGACATGTGT
CTGACCGGGCGGATGATGGATGCCGACGAGGCTTGGAAATGCGGCCTCGTCAGCCGCATCGTCCCGGTGGACGATCTCAA
GGACGAGGTGCTGAAGATCGCCGAGGCGATCGCCGATAAAAGCCTGCCGATCACCATGATGGTCAAGGAGGCGGTCAATG
CCGCCTATGAGACCACCCTGGCCCAGGGTGTCCGATTCGAGCGCCGGCTTTTCCAGGCGAGTTTCGCCACCGACGACCAG
AAGGAAGGCATGAACGCCTTCATCGAAAAGCGTCAGCCCAGTTTCACCGACCGCTGA

Upstream 100 bases:

>100_bases
GGCTTACCCTTTGGCGGCGGCCCCCGGTCCGCCCGCCGCCCGCCCACGGGCGGCCCGACAATCCCGCATGATCCTACCAC
CATTGAGGGAGCAGGCTCAG

Downstream 100 bases:

>100_bases
GGCGGCGCCGAAGTCGCGGGCAAGCGTTTTCCTTGACGGATGGACAGGTCCATCCTATAAAGCCGCCCTTCCGCGCGCTC
TGGCTGTCCGGGCCGGAACG

Product: short chain enoyl-CoA hydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAYENILVETNGKVGIVTLNRPKALNALSAGLVRDLGAALDAFEADVNVHVIVLTGSDKAFAAGADIKEMAEKSYMDAYL
EDFITKGWERVTTCRKPIIAAVAGFALGGGCEMAMMCDFIIAAQNAKFGQPEINLGTLPGAGGTQRLTRFVGKSKAMDMC
LTGRMMDADEAWKCGLVSRIVPVDDLKDEVLKIAEAIADKSLPITMMVKEAVNAAYETTLAQGVRFERRLFQASFATDDQ
KEGMNAFIEKRQPSFTDR

Sequences:

>Translated_258_residues
MAYENILVETNGKVGIVTLNRPKALNALSAGLVRDLGAALDAFEADVNVHVIVLTGSDKAFAAGADIKEMAEKSYMDAYL
EDFITKGWERVTTCRKPIIAAVAGFALGGGCEMAMMCDFIIAAQNAKFGQPEINLGTLPGAGGTQRLTRFVGKSKAMDMC
LTGRMMDADEAWKCGLVSRIVPVDDLKDEVLKIAEAIADKSLPITMMVKEAVNAAYETTLAQGVRFERRLFQASFATDDQ
KEGMNAFIEKRQPSFTDR
>Mature_257_residues
AYENILVETNGKVGIVTLNRPKALNALSAGLVRDLGAALDAFEADVNVHVIVLTGSDKAFAAGADIKEMAEKSYMDAYLE
DFITKGWERVTTCRKPIIAAVAGFALGGGCEMAMMCDFIIAAQNAKFGQPEINLGTLPGAGGTQRLTRFVGKSKAMDMCL
TGRMMDADEAWKCGLVSRIVPVDDLKDEVLKIAEAIADKSLPITMMVKEAVNAAYETTLAQGVRFERRLFQASFATDDQK
EGMNAFIEKRQPSFTDR

Specific function: Could possibly oxidize fatty acids using specific components [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]

Homologues:

Organism=Homo sapiens, GI194097323, Length=259, Percent_Identity=56.3706563706564, Blast_Score=291, Evalue=5e-79,
Organism=Homo sapiens, GI68989263, Length=189, Percent_Identity=34.9206349206349, Blast_Score=121, Evalue=8e-28,
Organism=Homo sapiens, GI31542718, Length=244, Percent_Identity=29.9180327868852, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI4502327, Length=257, Percent_Identity=35.408560311284, Blast_Score=117, Evalue=7e-27,
Organism=Homo sapiens, GI20127408, Length=211, Percent_Identity=35.5450236966825, Blast_Score=110, Evalue=9e-25,
Organism=Homo sapiens, GI70995211, Length=268, Percent_Identity=30.5970149253731, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI37594469, Length=192, Percent_Identity=30.7291666666667, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI37594471, Length=192, Percent_Identity=30.7291666666667, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI150378541, Length=247, Percent_Identity=31.9838056680162, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI261878539, Length=97, Percent_Identity=42.2680412371134, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI213417737, Length=238, Percent_Identity=26.0504201680672, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI157694516, Length=238, Percent_Identity=26.0504201680672, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI4757968, Length=261, Percent_Identity=24.5210727969349, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI49355787, Length=261, Percent_Identity=24.5210727969349, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI260274832, Length=259, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI45643119, Length=259, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI260275230, Length=259, Percent_Identity=24.3243243243243, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI25453481, Length=261, Percent_Identity=24.5210727969349, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI51538573, Length=261, Percent_Identity=24.5210727969349, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4757966, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI51538581, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI221136756, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI221136753, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI221307494, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI62530384, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1787659, Length=253, Percent_Identity=44.6640316205534, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI221142681, Length=263, Percent_Identity=34.6007604562738, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788597, Length=263, Percent_Identity=34.9809885931559, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI87082183, Length=259, Percent_Identity=31.2741312741313, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787660, Length=260, Percent_Identity=31.1538461538462, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790281, Length=175, Percent_Identity=32.5714285714286, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788682, Length=201, Percent_Identity=32.8358208955224, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17554946, Length=260, Percent_Identity=54.2307692307692, Blast_Score=278, Evalue=2e-75,
Organism=Caenorhabditis elegans, GI25145438, Length=244, Percent_Identity=52.8688524590164, Blast_Score=263, Evalue=4e-71,
Organism=Caenorhabditis elegans, GI17540714, Length=220, Percent_Identity=31.8181818181818, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17540306, Length=235, Percent_Identity=32.3404255319149, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17558304, Length=186, Percent_Identity=34.4086021505376, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17560910, Length=253, Percent_Identity=30.0395256916996, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17534483, Length=257, Percent_Identity=28.0155642023346, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI25144276, Length=186, Percent_Identity=36.0215053763441, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17508951, Length=186, Percent_Identity=36.0215053763441, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17508953, Length=186, Percent_Identity=36.0215053763441, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25144160, Length=198, Percent_Identity=34.8484848484849, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI25144157, Length=198, Percent_Identity=34.8484848484849, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17536985, Length=261, Percent_Identity=29.5019157088123, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17549921, Length=204, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17535521, Length=211, Percent_Identity=27.4881516587678, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI25141363, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320241, Length=199, Percent_Identity=29.6482412060301, Blast_Score=96, Evalue=6e-21,
Organism=Drosophila melanogaster, GI20129971, Length=258, Percent_Identity=58.9147286821705, Blast_Score=302, Evalue=1e-82,
Organism=Drosophila melanogaster, GI24653477, Length=258, Percent_Identity=58.9147286821705, Blast_Score=302, Evalue=1e-82,
Organism=Drosophila melanogaster, GI24653139, Length=250, Percent_Identity=35.2, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI19922422, Length=253, Percent_Identity=27.6679841897233, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21357171, Length=268, Percent_Identity=29.4776119402985, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24650670, Length=210, Percent_Identity=32.3809523809524, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI19920382, Length=223, Percent_Identity=32.2869955156951, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24654903, Length=191, Percent_Identity=27.7486910994764, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571730, Length=199, Percent_Identity=28.1407035175879, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571729, Length=199, Percent_Identity=28.1407035175879, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI19921000, Length=180, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24583077, Length=175, Percent_Identity=33.7142857142857, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24583079, Length=175, Percent_Identity=33.7142857142857, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24583165, Length=174, Percent_Identity=30.4597701149425, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI19921018, Length=178, Percent_Identity=29.2134831460674, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014748
- InterPro:   IPR001753
- InterPro:   IPR018376 [H]

Pfam domain/function: PF00378 ECH [H]

EC number: =4.2.1.17 [H]

Molecular weight: Translated: 27963; Mature: 27831

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00166 ENOYL_COA_HYDRATASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYENILVETNGKVGIVTLNRPKALNALSAGLVRDLGAALDAFEADVNVHVIVLTGSDKA
CCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
FAAGADIKEMAEKSYMDAYLEDFITKGWERVTTCRKPIIAAVAGFALGGGCEMAMMCDFI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IAAQNAKFGQPEINLGTLPGAGGTQRLTRFVGKSKAMDMCLTGRMMDADEAWKCGLVSRI
HHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHC
VPVDDLKDEVLKIAEAIADKSLPITMMVKEAVNAAYETTLAQGVRFERRLFQASFATDDQ
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KEGMNAFIEKRQPSFTDR
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AYENILVETNGKVGIVTLNRPKALNALSAGLVRDLGAALDAFEADVNVHVIVLTGSDKA
CCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
FAAGADIKEMAEKSYMDAYLEDFITKGWERVTTCRKPIIAAVAGFALGGGCEMAMMCDFI
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IAAQNAKFGQPEINLGTLPGAGGTQRLTRFVGKSKAMDMCLTGRMMDADEAWKCGLVSRI
HHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHC
VPVDDLKDEVLKIAEAIADKSLPITMMVKEAVNAAYETTLAQGVRFERRLFQASFATDDQ
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
KEGMNAFIEKRQPSFTDR
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7751302; 11481430 [H]