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The map label for this gene is ybbN [H]

Identifier: 83595040

GI number: 83595040

Start: 4261100

End: 4262038

Strand: Reverse

Name: ybbN [H]

Synonym: Rru_A3711

Alternate gene names: 83595040

Gene position: 4262038-4261100 (Counterclockwise)

Preceding gene: 83595061

Following gene: 83595039

Centisome position: 97.91

GC content: 67.94

Gene sequence:

>939_bases
ATGTCCCTGATCTTCGATGGCAGCGGCACCCCGATCAAGGCGACCACCGCCCCCAAAAGCGGTAGCGGTTCGGGCGCGCT
GGTCAAGGACAGCGATACCCCGCGCTTCGCCGCCGACGTGATCGAGGCCAGCCGCGAGGTTCCGGTGATCGTCGATTTCT
GGTCGCCGTCGTCGCCGGCCTGCGCCACGCTGACCGCCCTGCTCGAACGCCTGGTCACCCAGCGCGCCGGCGCCGTCCGC
CTGGTCAAGATCAACATCGACTCCAACCGCGAGTTGGCCGCCCAGTTGCGCCTGCAGTCGGTGCCGACCATTTACGCCTT
CGCCGACGGCCGACCGGTCGATGGCTTCATGGGCGCCCTGCCCGAAGCCGAGGTCAAAGCCTTCATCGACCGCCTGACCG
GCAATGCCGGCGACGTTATCGACGAGGCCCTGGCCCAGGCCGACGCCCTGCGCGATCAGGGCGACATCGACAGCGCCTTC
GACATCTATCAGCAGGTCCTCGAGCAAGATCAGGCCAATCCCCGGGCGATGGCCGGCGCCCTGCGCTGCCGGCTGGCCCA
GGGCGCGAACGACGAGGTCCGCGAGGTTCTGAACCGTTTGCCGCCCGCCCTGGCCGGCCATGCCGAGATTATCGCCCTGA
AAAGCGTCCTCGATCTGGCCGAACAGGCCGAGAAGGCCGGGCCGACCGCCGAGTTGCGCGCGCGGATCGCTGCCGATCCC
GCCGACCATCAGGCGTCGATCGATCTGGCCGTGGCGCTGTTCGCCGCTGGCGATACCGAGGCGGCGATGGATCTGCTGCT
CGAGTCCATCCGCCGCGACCGCGCCTGGAACGAGGAGGCCGCCCGCAAGCAGCTTCTGAAGTTCTGGGAAGCCCTTGGCC
ATACCCACCCTTTGACCGTCGGCGGTCGGCGCAAGCTAAGCTCCATCTTGTTTTCCTGA

Upstream 100 bases:

>100_bases
CCGCTTGCGCGCGCCCCTTGCTTCGGCGCGGCGGACCCGTCACATAAGGGGCACCGAAATTTTCCGGTCTTTCAACACCC
CAGGCGAGGCGAGATACCCC

Downstream 100 bases:

>100_bases
TCAGAAATCCGGGGCGACCGGCGGCTGGGCCGCCGGACCCCGGTTGGAGGGGTATGCGATGAGTGCCAGCGTCTTCCAGC
CGCGTTTTGCCGCCCTGCCA

Product: thioredoxin-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSLIFDGSGTPIKATTAPKSGSGSGALVKDSDTPRFAADVIEASREVPVIVDFWSPSSPACATLTALLERLVTQRAGAVR
LVKINIDSNRELAAQLRLQSVPTIYAFADGRPVDGFMGALPEAEVKAFIDRLTGNAGDVIDEALAQADALRDQGDIDSAF
DIYQQVLEQDQANPRAMAGALRCRLAQGANDEVREVLNRLPPALAGHAEIIALKSVLDLAEQAEKAGPTAELRARIAADP
ADHQASIDLAVALFAAGDTEAAMDLLLESIRRDRAWNEEAARKQLLKFWEALGHTHPLTVGGRRKLSSILFS

Sequences:

>Translated_312_residues
MSLIFDGSGTPIKATTAPKSGSGSGALVKDSDTPRFAADVIEASREVPVIVDFWSPSSPACATLTALLERLVTQRAGAVR
LVKINIDSNRELAAQLRLQSVPTIYAFADGRPVDGFMGALPEAEVKAFIDRLTGNAGDVIDEALAQADALRDQGDIDSAF
DIYQQVLEQDQANPRAMAGALRCRLAQGANDEVREVLNRLPPALAGHAEIIALKSVLDLAEQAEKAGPTAELRARIAADP
ADHQASIDLAVALFAAGDTEAAMDLLLESIRRDRAWNEEAARKQLLKFWEALGHTHPLTVGGRRKLSSILFS
>Mature_311_residues
SLIFDGSGTPIKATTAPKSGSGSGALVKDSDTPRFAADVIEASREVPVIVDFWSPSSPACATLTALLERLVTQRAGAVRL
VKINIDSNRELAAQLRLQSVPTIYAFADGRPVDGFMGALPEAEVKAFIDRLTGNAGDVIDEALAQADALRDQGDIDSAFD
IYQQVLEQDQANPRAMAGALRCRLAQGANDEVREVLNRLPPALAGHAEIIALKSVLDLAEQAEKAGPTAELRARIAADPA
DHQASIDLAVALFAAGDTEAAMDLLLESIRRDRAWNEEAARKQLLKFWEALGHTHPLTVGGRRKLSSILFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=103, Percent_Identity=34.9514563106796, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI87081747, Length=272, Percent_Identity=27.9411764705882, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788936, Length=104, Percent_Identity=33.6538461538462, Blast_Score=78, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI212646193, Length=107, Percent_Identity=41.1214953271028, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 33326; Mature: 33195

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIFDGSGTPIKATTAPKSGSGSGALVKDSDTPRFAADVIEASREVPVIVDFWSPSSPA
CCEEECCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCH
CATLTALLERLVTQRAGAVRLVKINIDSNRELAAQLRLQSVPTIYAFADGRPVDGFMGAL
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHCC
PEAEVKAFIDRLTGNAGDVIDEALAQADALRDQGDIDSAFDIYQQVLEQDQANPRAMAGA
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LRCRLAQGANDEVREVLNRLPPALAGHAEIIALKSVLDLAEQAEKAGPTAELRARIAADP
HHHHHHCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
ADHQASIDLAVALFAAGDTEAAMDLLLESIRRDRAWNEEAARKQLLKFWEALGHTHPLTV
CCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
GGRRKLSSILFS
CHHHHHHHHHCC
>Mature Secondary Structure 
SLIFDGSGTPIKATTAPKSGSGSGALVKDSDTPRFAADVIEASREVPVIVDFWSPSSPA
CEEECCCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCH
CATLTALLERLVTQRAGAVRLVKINIDSNRELAAQLRLQSVPTIYAFADGRPVDGFMGAL
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHCC
PEAEVKAFIDRLTGNAGDVIDEALAQADALRDQGDIDSAFDIYQQVLEQDQANPRAMAGA
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LRCRLAQGANDEVREVLNRLPPALAGHAEIIALKSVLDLAEQAEKAGPTAELRARIAADP
HHHHHHCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
ADHQASIDLAVALFAAGDTEAAMDLLLESIRRDRAWNEEAARKQLLKFWEALGHTHPLTV
CCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
GGRRKLSSILFS
CHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]