Click here to switch to the map view.

The map label for this gene is gcdB [H]

Identifier: 83595002

GI number: 83595002

Start: 4220927

End: 4222057

Strand: Reverse

Name: gcdB [H]

Synonym: Rru_A3673

Alternate gene names: 83595002

Gene position: 4222057-4220927 (Counterclockwise)

Preceding gene: 83595003

Following gene: 83595001

Centisome position: 97.0

GC content: 62.78

Gene sequence:

>1131_bases
GTGCTCGACCAACTGATCGCCTTCGCCCAGGCGCTGGAATCCCAGACGGGCCTCTCGCATTTCTGGTGGGGCAACGCGGT
GATGATCGCCATCGGCGCGACGATGATCTATCTGGCGGTGTCGAAGAAATACGAGCCGCTGTTGCTGGTCGGCATCGGTT
TTTCGTGCATCATCGCCAATGTGCCGGGCTCGGATCTGATCTTGCCGGGCGGCTTGTTCAACTACGCCTATCAGGGGGTG
GCGCTGCTGATCATCCCGCCGCTGATCTTCTTTGGCGTCGGCGCCATGACCGATTTCGGCCCGATGATCGCCAACCCCAA
GCTGGTGATCCTGGGGGCGGCGGCCCATCTGGGGATCTTCGTCGCCCTGATCCTGGCCAAGCTGCTGGGCTTCACCCTGG
CCGAGGCCGGGGCGATCGGCATCATCGGCGGGGCCGACGGACCGATGGCGATCTTCGTGACGATGAAACTGGCCCCCCAT
CTGCTGCCGCAGGTGTCGGTGGCGGCCTATTCCTATATGGCGCTGATGCCGCTGATCCAGCCGCCGGTGATGCGCCTGCT
GACCACGCGCAAGGAACGGCTGATCACCATGCGCCAGTCGCGGCCGGTCAGCCGCCTGGAAAAGATCGCCTTTCCCATCG
TCATCGGTATCGTCGTCAATCTGTTCCTGCCGCCGGTGGCGCCGCTGATCACCATGCTGATGCTGGGCAATCTGTTCCGC
GAGGTGCTGGTGGTCGACCGACTGGTCAAGACGGCGGCCAATGATCTGATGAACGTCATCATCATCATCCTGACCGTCGC
CATCGGCTCGACGATGAACGCCGACAGCTTCCTGACCATTCAGACGGTGCAGATCGTCGTGCTCGGACTGGTCGCCTTCA
TCTTCGGCACCGCCTCGGGGGTGATCGGGGCGAAGATCATGAACCTGTTCCTCAAGGAAAAGATCAATCCGCTGCTCGGG
TCGGCGGGCATCGCCTCGGTGCCGATCGCCGCCCGCGTCTCCCATATCGTCGCCCTGCGCGAGAACCCGACCAACTATCT
GATCTATCACGCCATGGGTCCCAATCTGGCCGGCGTCTTCGGCACCGCCATCTCGGGCGGCATCATGCTGGCGCTGATCG
GGGTCAAATAA

Upstream 100 bases:

>100_bases
CCACGCGCCGCTTGTGCCGGCCGCTTTCCCCAAGCGGCCATCCCCCGCCGCCCGACCTCCGTCGGGATCGCCTTCGCCCC
CAGCCCGAGGGACCCCCACC

Downstream 100 bases:

>100_bases
GCGATCCCGATCGGCCGGGCTTTCCCTTATAGTCCGCCGATCGGCTTTTCCGGCCGCCGCTCCAAGGCCCGCCACCAAGG
ATCGTTCGCGTGACCCATCG

Product: glutaconyl-CoA decarboxylase

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLDQLIAFAQALESQTGLSHFWWGNAVMIAIGATMIYLAVSKKYEPLLLVGIGFSCIIANVPGSDLILPGGLFNYAYQGV
ALLIIPPLIFFGVGAMTDFGPMIANPKLVILGAAAHLGIFVALILAKLLGFTLAEAGAIGIIGGADGPMAIFVTMKLAPH
LLPQVSVAAYSYMALMPLIQPPVMRLLTTRKERLITMRQSRPVSRLEKIAFPIVIGIVVNLFLPPVAPLITMLMLGNLFR
EVLVVDRLVKTAANDLMNVIIIILTVAIGSTMNADSFLTIQTVQIVVLGLVAFIFGTASGVIGAKIMNLFLKEKINPLLG
SAGIASVPIAARVSHIVALRENPTNYLIYHAMGPNLAGVFGTAISGGIMLALIGVK

Sequences:

>Translated_376_residues
MLDQLIAFAQALESQTGLSHFWWGNAVMIAIGATMIYLAVSKKYEPLLLVGIGFSCIIANVPGSDLILPGGLFNYAYQGV
ALLIIPPLIFFGVGAMTDFGPMIANPKLVILGAAAHLGIFVALILAKLLGFTLAEAGAIGIIGGADGPMAIFVTMKLAPH
LLPQVSVAAYSYMALMPLIQPPVMRLLTTRKERLITMRQSRPVSRLEKIAFPIVIGIVVNLFLPPVAPLITMLMLGNLFR
EVLVVDRLVKTAANDLMNVIIIILTVAIGSTMNADSFLTIQTVQIVVLGLVAFIFGTASGVIGAKIMNLFLKEKINPLLG
SAGIASVPIAARVSHIVALRENPTNYLIYHAMGPNLAGVFGTAISGGIMLALIGVK
>Mature_376_residues
MLDQLIAFAQALESQTGLSHFWWGNAVMIAIGATMIYLAVSKKYEPLLLVGIGFSCIIANVPGSDLILPGGLFNYAYQGV
ALLIIPPLIFFGVGAMTDFGPMIANPKLVILGAAAHLGIFVALILAKLLGFTLAEAGAIGIIGGADGPMAIFVTMKLAPH
LLPQVSVAAYSYMALMPLIQPPVMRLLTTRKERLITMRQSRPVSRLEKIAFPIVIGIVVNLFLPPVAPLITMLMLGNLFR
EVLVVDRLVKTAANDLMNVIIIILTVAIGSTMNADSFLTIQTVQIVVLGLVAFIFGTASGVIGAKIMNLFLKEKINPLLG
SAGIASVPIAARVSHIVALRENPTNYLIYHAMGPNLAGVFGTAISGGIMLALIGVK

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 39806; Mature: 39806

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQLIAFAQALESQTGLSHFWWGNAVMIAIGATMIYLAVSKKYEPLLLVGIGFSCIIAN
CHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEE
VPGSDLILPGGLFNYAYQGVALLIIPPLIFFGVGAMTDFGPMIANPKLVILGAAAHLGIF
CCCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHH
VALILAKLLGFTLAEAGAIGIIGGADGPMAIFVTMKLAPHLLPQVSVAAYSYMALMPLIQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHC
PPVMRLLTTRKERLITMRQSRPVSRLEKIAFPIVIGIVVNLFLPPVAPLITMLMLGNLFR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EVLVVDRLVKTAANDLMNVIIIILTVAIGSTMNADSFLTIQTVQIVVLGLVAFIFGTASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCH
VIGAKIMNLFLKEKINPLLGSAGIASVPIAARVSHIVALRENPTNYLIYHAMGPNLAGVF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCEEEEEECCCCHHHHH
GTAISGGIMLALIGVK
HHHHCCCEEEEEEECC
>Mature Secondary Structure
MLDQLIAFAQALESQTGLSHFWWGNAVMIAIGATMIYLAVSKKYEPLLLVGIGFSCIIAN
CHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEE
VPGSDLILPGGLFNYAYQGVALLIIPPLIFFGVGAMTDFGPMIANPKLVILGAAAHLGIF
CCCCCEEECCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHH
VALILAKLLGFTLAEAGAIGIIGGADGPMAIFVTMKLAPHLLPQVSVAAYSYMALMPLIQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHC
PPVMRLLTTRKERLITMRQSRPVSRLEKIAFPIVIGIVVNLFLPPVAPLITMLMLGNLFR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EVLVVDRLVKTAANDLMNVIIIILTVAIGSTMNADSFLTIQTVQIVVLGLVAFIFGTASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCH
VIGAKIMNLFLKEKINPLLGSAGIASVPIAARVSHIVALRENPTNYLIYHAMGPNLAGVF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCCCEEEEEECCCCHHHHH
GTAISGGIMLALIGVK
HHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]