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The map label for this gene is secD [H]

Identifier: 83595000

GI number: 83595000

Start: 4217807

End: 4220368

Strand: Reverse

Name: secD [H]

Synonym: Rru_A3671

Alternate gene names: 83595000

Gene position: 4220368-4217807 (Counterclockwise)

Preceding gene: 83595001

Following gene: 83594998

Centisome position: 96.96

GC content: 66.04

Gene sequence:

>2562_bases
ATGCTGTATTTTTCCAAAGCCAAGACGATCGCGATCATCGCGGTCTGTCTGATCGGCCTTCTGCTTGCCCTGCCCAACGC
CTTCAAGCACGGCTCGCTGCCCGACTGGTTGCCGCAGAACCGCATCACCCTGGGCCTCGACCTCCAGGGCGGCTCGCATC
TGCTGCTTGCCGTCGATATGCCGGCGGTCATCCACGACCGACTGGAAACCATGCTTGAAAGCGTGCGCACCAATCTGCGC
AAGGACTCGCTGCGCTATACCGGTCTGGCGGTGCGCGACCGCTCGGTGGTTTTCACCCTGGCCTCGGCTGACGACATCGA
AACCGCGCGCGGCGCCCTGGCGCCGCTGGTCCAGCCCGACGAGCCGGGCAAGCCGGCCGATTACGGCCTGACCTTCGATG
GCCTGACCGGGCGCATCGCCCTGGCCGATTCGGGCGTTCAGGCCTGGGCCGACAAGGCCGCCCAACAGTCGATCGAAATC
GTCCGCCGCCGCATCGACGAGACCGGCGTCAACGAGCCGATGATCGCCCGCCAGGGCGCCGACCGCATCCTGGTCCAGCT
TCCCGGCGTTTCCGATCCCGGCCGCATCAAGCGCCTGCTCGGCCAGACCGCCAAGATGACCTTCCATATGGTCGGCGACC
GGGCCTTGGGCGATGGCAGCGTTCCCGCCGGCTACCGGCTGCTGCCCTCGGCCGATCCCGCCCGTCCGGGCGAAAAGATC
CTGGTGTCGCGCAAGGTCGAGGTCGACGGCAGTCATCTGACCGACGCCAAGCCCAGCTTCGACCAGCAGAACGGCCAGTG
GGTGGTCAGCTTCTCCTTCGACGGCCAGGGCGCCCGCCGCTTCGCCGATGTCACCAAGATGGCCGTCGGCAAGCCCTTCG
CCATCGTGCTTGACGACAAGGTGGTCAGCGCCCCGGTCATCCGCGAGCCGATCACCGGCGGACGCGGGCAGATTTCGGGC
AGCTTCACCGCCGCCAGCGCCAATGATCTGGCGGTGCTGCTGCGCGCCGGCGCCCTGCCGGCCCCCCTGACCGTGGTCGA
GGAACGCACCGTCGGCCCCGATCTCGGCGCCGATTCGATCCGCGCCGGCATGATCGCCATCAGCGTCGGCTTCGTGCTGG
TGGTCGCCTATATGGGCATCTTCTACGGCCTGTTCGGCTGGTTCGCCAATGTCGCCCTGGTCTTCAATCTGGCGATCACC
CTTGGCGCCTTGTCGTTGATGCAGGCCACCTTGACCCTGCCCGGCATCGCCGGCCTGCTGCTGTCGCTGGGCATGGCGGT
CGATGCCAATATCCTGATCAACGAGCGCATCCGCGAAGAGGCCAAAAAGGGGCGGGGCGTCGCCGCGTCGATGGAAACCG
GCTTCAAGCGCGCCTTCGCCACCATCTTCGATTCCAACATCACCACCCTGATCAAGATGGCGATCTTGTTCTCGATCGGC
GTCGGCACCATCCGCGGCTTCGCCGTGACCATCTCGCTGGGCATCATCGTCAGCATGTTCACCGCGATCACCGTCACCCG
CTTGCTGATGGTGATCTGGTTCCGCCGCACCAAGCCCAAGAGCCTGCCGATGGCCAACCATTTCCGGCTGGTTCCCGATC
ACACCAAGATCGCCTTCATGCGCGGCCGCCTGCTTGGGCTGGGCGGATCGGTGGTGCTGTCGGTCGCCTCGGTGGTGCTG
TTCTTCCACCCCGGCCTGAATTACGGCGTCGATTTCGCCGGCGGCACGGTGATGGAGGTGCGCTCGCAGAACGCCGTCGA
TTTCCCGGCCTTGCGCACCGATCTTCAGTCGCTGCCGATCGGCCCGGTCCAGCTTCAGGCTTTTGGCTCGCCCAATGACG
TGCTGATCCGCCTGGAACGCCAGGAAGGCGGCGACGCCGCCCAGGCCGAGGTGGTCAAGCAGGTCCAGGGCATGCTGGAG
CGCGACTATGCCGGCAGCGAGATCCGCCGGGTCGACAGCGTCGGCGCCTCGGTCTCGGCCGAGTTGTTCCAAGACGGCAT
GATGGCCCTTGGTTTGGCCGCCATCGCCATGCTGATCTATATCTGGTTCCGCTTCGAATGGCAGTTCGGCGTCGGCGCCG
TGGTCACCATGCTGCTCGACGTGACCAAGACGGTGGGCTTCTTCGCCATCACCGGCATGCAGTTCAACCTAACGGCCATC
GCCGCCATCCTGACCATCATGGGCTATTCGATCAACGACAAGGTCGTGGTCTATGACCGGGTGCGCGAGAACCTGCGGCT
GTACCGCACCATGCCCCTGCGGCAGTTGATCGACAAATCGATCAATGAAACCCTGGGACGGACGGTGGGCACCTCGCTTG
CCACCTTCCTCGCCATCATCCCGCTGGCCGTCTTCGGCGGCGAGGCCCTGCGCGAATTCGCCCTGGTGCTGCTGTTTGGC
GTGGTGCTGGCGACCAGTTCGTCGGTGTTCATCGCCGCGCCGCTGCTTCTGCTGCTGGGCGAGCACCGGCTGCGTCCGGG
GCTGTCGGCCAAGGCGCTGGCCAAGACCGAGGGCGAGACCGAGACCGATGACACCGGCGAGGCGCCGACCCCGGCGCGGT
GA

Upstream 100 bases:

>100_bases
CCGCCCTCCCGGCCTTTCGCGTCGCCCGAGGTCTGTTTCCACCCCGCCCGCCCGTCGCCCCGCACCCCCTGCGACCCGAC
GCGGCGGATGGAGATCACGA

Downstream 100 bases:

>100_bases
CCCCCGCCTTCCTTGAACAGAAAACGGCCGGTGGGGCATCCCGCCGGCCGTTTTCTTGTGGGGGACCCTTACAAGCGCGG
CAGCAGGGCCTCGGCGATCA

Product: bifunctional preprotein translocase subunit SecD/SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 853; Mature: 853

Protein sequence:

>853_residues
MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLR
KDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEI
VRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPGEKI
LVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDKVVSAPVIREPITGGRGQISG
SFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAIT
LGALSLMQATLTLPGIAGLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG
VGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKIAFMRGRLLGLGGSVVLSVASVVL
FFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLE
RDYAGSEIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAI
AAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAIIPLAVFGGEALREFALVLLFG
VVLATSSSVFIAAPLLLLLGEHRLRPGLSAKALAKTEGETETDDTGEAPTPAR

Sequences:

>Translated_853_residues
MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLR
KDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEI
VRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPGEKI
LVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDKVVSAPVIREPITGGRGQISG
SFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAIT
LGALSLMQATLTLPGIAGLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG
VGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKIAFMRGRLLGLGGSVVLSVASVVL
FFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLE
RDYAGSEIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAI
AAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAIIPLAVFGGEALREFALVLLFG
VVLATSSSVFIAAPLLLLLGEHRLRPGLSAKALAKTEGETETDDTGEAPTPAR
>Mature_853_residues
MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLR
KDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEI
VRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPGEKI
LVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDKVVSAPVIREPITGGRGQISG
SFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAIT
LGALSLMQATLTLPGIAGLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG
VGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKIAFMRGRLLGLGGSVVLSVASVVL
FFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLE
RDYAGSEIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAI
AAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAIIPLAVFGGEALREFALVLLFG
VVLATSSSVFIAAPLLLLLGEHRLRPGLSAKALAKTEGETETDDTGEAPTPAR

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=522, Percent_Identity=36.9731800766284, Blast_Score=314, Evalue=1e-86,
Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=36.6013071895425, Blast_Score=196, Evalue=6e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 91543; Mature: 91543

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDM
CCEECCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECC
PAVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPD
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHCCCCCCC
EPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPMIARQGA
CCCCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
DRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPGEKI
CEEEEEECCCCCHHHHHHHHCHHHHEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
LVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDK
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
VVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSI
HHCCCHHHCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH
RAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG
HHHCHHCCCHHEEHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKIAFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEE
RGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPI
CCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
GPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVGASVSA
CCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
ELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHEEEEECCEEHHHHH
AAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAII
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLLGEHRLRPGLSAKALAKTEGET
HHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHCCCCC
ETDDTGEAPTPAR
CCCCCCCCCCCCC
>Mature Secondary Structure
MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSLPDWLPQNRITLGLDLQGGSHLLLAVDM
CCEECCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEECC
PAVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPD
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHCCCCCCC
EPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPMIARQGA
CCCCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
DRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPGEKI
CEEEEEECCCCCHHHHHHHHCHHHHEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
LVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDK
EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
VVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSI
HHCCCHHHCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHH
RAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIG
HHHCHHCCCHHEEHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKIAFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEE
RGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQSLPI
CCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
GPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVGASVSA
CCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
ELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNLTAI
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHEEEEECCEEHHHHH
AAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFLAII
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLLGEHRLRPGLSAKALAKTEGET
HHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHCCCCC
ETDDTGEAPTPAR
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]