Click here to switch to the map view.

The map label for this gene is ydiA [C]

Identifier: 83594944

GI number: 83594944

Start: 4153362

End: 4154189

Strand: Reverse

Name: ydiA [C]

Synonym: Rru_A3615

Alternate gene names: 83594944

Gene position: 4154189-4153362 (Counterclockwise)

Preceding gene: 83594949

Following gene: 83594943

Centisome position: 95.44

GC content: 64.13

Gene sequence:

>828_bases
ATGTCGATGCAATCCCACCACGTCCATCTGGTCTCCGACGCCACCGGAGAGACCGTCAGCAACGTTGTCCGGGCCTGTCT
GGCCCAGTTCGAGGATGTTCGCGTCGTCCAGCACCGCTGGTGGCTGCTGCGCAGCCCCAGTCAGGTCGGCCGGGTGATCG
AGGGCATTCAGCGCGATCCGGGAACCGTGGTCTTTACCGTGGTCGATCCGGAAATCCGCCGGGCCCTGGAAGAGGCCTGC
CGCCTGATCAATATTCCCTGCGTCGCCCTGCTCGATCCGGTGATGGACGCCCTGGCCTTGGTCCTTGAAACCAAGGGAAA
CCAACAGCCCGGACGCCAATACACCCTTGATGAGGGCTATTTTTCGCGGATCGAGGCGATGCATTTCGCCCTCGCCCTCG
ATGATGGCCAGTCCCTTGATCGCCTGAAGCAGGCCGAGGTGGTGGTGGTCGGCGTCTCGCGCACGTCAAAAACGCCAACC
TGTATGTTTCTCGCCAACAAGGGGATCCGTGCGGCCAATGTGCCGCTGGTGCCCGGCATCGATCCGCCGGCCGAATTGAT
GGATCTGGCCGGGCCGCTGGTCGTCGGCCTGACCCGCGATCCCAAAAGCCTGTCGGACATGCGGCGATCGCGCTTGCGGC
TGATGCGCGAGGATGGCGACAGCCCCTATGCCGAAGAGGATTCCGTTGCCCGCGAGGTGCGCGAGGCGCGGCGCCTTTAT
GCCCGCATGGGCTGGACGGTGATCGACGTCACCCGCAAATCGATTGAAGAGGTGGCCGCCACCATCATGCAAAAGCTTGG
CACCGCGCCCTGGGGCGAGGGGCTGTGA

Upstream 100 bases:

>100_bases
CCAAACGCATCGCGGAGTCTTCCCCGTTATCCCGTGTTTTCCACAGGCCGCCGATCGGCTAAAACGAGCGTCTTGAGTTC
TGGGGAGGCCGGGTCCGCCG

Downstream 100 bases:

>100_bases
GCGCCCTGGTTCCCCCTGTTCTGCTGGCCTCGTCCAGCCCGTCGCGCGGACGGCTGCTCAGCGAGGCCGGGGTGCCCTTC
ACCGCCGCCGCCCCCGGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSMQSHHVHLVSDATGETVSNVVRACLAQFEDVRVVQHRWWLLRSPSQVGRVIEGIQRDPGTVVFTVVDPEIRRALEEAC
RLINIPCVALLDPVMDALALVLETKGNQQPGRQYTLDEGYFSRIEAMHFALALDDGQSLDRLKQAEVVVVGVSRTSKTPT
CMFLANKGIRAANVPLVPGIDPPAELMDLAGPLVVGLTRDPKSLSDMRRSRLRLMREDGDSPYAEEDSVAREVREARRLY
ARMGWTVIDVTRKSIEEVAATIMQKLGTAPWGEGL

Sequences:

>Translated_275_residues
MSMQSHHVHLVSDATGETVSNVVRACLAQFEDVRVVQHRWWLLRSPSQVGRVIEGIQRDPGTVVFTVVDPEIRRALEEAC
RLINIPCVALLDPVMDALALVLETKGNQQPGRQYTLDEGYFSRIEAMHFALALDDGQSLDRLKQAEVVVVGVSRTSKTPT
CMFLANKGIRAANVPLVPGIDPPAELMDLAGPLVVGLTRDPKSLSDMRRSRLRLMREDGDSPYAEEDSVAREVREARRLY
ARMGWTVIDVTRKSIEEVAATIMQKLGTAPWGEGL
>Mature_274_residues
SMQSHHVHLVSDATGETVSNVVRACLAQFEDVRVVQHRWWLLRSPSQVGRVIEGIQRDPGTVVFTVVDPEIRRALEEACR
LINIPCVALLDPVMDALALVLETKGNQQPGRQYTLDEGYFSRIEAMHFALALDDGQSLDRLKQAEVVVVGVSRTSKTPTC
MFLANKGIRAANVPLVPGIDPPAELMDLAGPLVVGLTRDPKSLSDMRRSRLRLMREDGDSPYAEEDSVAREVREARRLYA
RMGWTVIDVTRKSIEEVAATIMQKLGTAPWGEGL

Specific function: Unknown

COG id: COG1806

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pyruvate, phosphate dikinase regulatory protein family

Homologues:

Organism=Escherichia coli, GI1787995, Length=272, Percent_Identity=32.7205882352941, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3615_RHORT (Q2RN86)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428696.1
- STRING:   Q2RN86
- GeneID:   3837071
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3615
- NMPDR:   fig|1085.1.peg.1882
- eggNOG:   COG1806
- HOGENOM:   HBG304855
- OMA:   AMEFAVM
- PhylomeDB:   Q2RN86
- ProtClustDB:   PRK05339
- BioCyc:   RRUB269796:RRU_A3615-MONOMER
- HAMAP:   MF_01062
- InterPro:   IPR005177

Pfam domain/function: PF03618 DUF299

EC number: NA

Molecular weight: Translated: 30510; Mature: 30378

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMQSHHVHLVSDATGETVSNVVRACLAQFEDVRVVQHRWWLLRSPSQVGRVIEGIQRDP
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
GTVVFTVVDPEIRRALEEACRLINIPCVALLDPVMDALALVLETKGNQQPGRQYTLDEGY
CEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHH
FSRIEAMHFALALDDGQSLDRLKQAEVVVVGVSRTSKTPTCMFLANKGIRAANVPLVPGI
HHHHHHHHHHEEECCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCC
DPPAELMDLAGPLVVGLTRDPKSLSDMRRSRLRLMREDGDSPYAEEDSVAREVREARRLY
CCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ARMGWTVIDVTRKSIEEVAATIMQKLGTAPWGEGL
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SMQSHHVHLVSDATGETVSNVVRACLAQFEDVRVVQHRWWLLRSPSQVGRVIEGIQRDP
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
GTVVFTVVDPEIRRALEEACRLINIPCVALLDPVMDALALVLETKGNQQPGRQYTLDEGY
CEEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHH
FSRIEAMHFALALDDGQSLDRLKQAEVVVVGVSRTSKTPTCMFLANKGIRAANVPLVPGI
HHHHHHHHHHEEECCCHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCC
DPPAELMDLAGPLVVGLTRDPKSLSDMRRSRLRLMREDGDSPYAEEDSVAREVREARRLY
CCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
ARMGWTVIDVTRKSIEEVAATIMQKLGTAPWGEGL
HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA