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The map label for this gene is yddU [C]

Identifier: 83594823

GI number: 83594823

Start: 4021982

End: 4023163

Strand: Direct

Name: yddU [C]

Synonym: Rru_A3494

Alternate gene names: 83594823

Gene position: 4021982-4023163 (Clockwise)

Preceding gene: 83594822

Following gene: 83594824

Centisome position: 92.4

GC content: 63.62

Gene sequence:

>1182_bases
ATGCCCGGAAGAAAACCCATCGCCTTGCTCATCGATGACGATCCGGAAATACGGGCCTTCATCCGCGCCGTCCTCACGCC
GATGGATTTCTTCTGCGAGGAATTCGACGGCTTTGGCGCCTTGCGCGACCGCACGGAGGTCAATGACGCCGACGTCATCA
TCCTGGATCTATCGCTGGGCGAGGATGATGGGGTGGAGGTGCTGCGCTGGCTGGCCGATCGGCGTTGTCCGGCCGGAATC
GCCCTGGTGTCGAGTTTCGACGAGCGCCTGCTGGCCACCGCCCTCAAGGTCGGGCAATCCTATGGGCTTTCGATGCTGAA
GTGCCTGCGCAAACCGGTCAAGCCCGTCGATCTGCGCGAAATGCTGGCCAATCGCCCGCGCCCGCAAAGCGCGATCGCCC
GCGAAGAACTGGCCCTCGGCATCGAGGCCCGGGAACTGGTTCTTTTCTACCAGCCCAAAATCGAGGTGGCGACGGGGGCG
GTCAGCAGCGCCGAGGCCCTAGTGCGCTGGAACAACGGTCGGCGCGGGTTGATCTTTCCCGGCAGCTTCATTCCTTTGGC
CGAGACTTCCGGCCTGATGTCGACGATGACCGATATGGTGCTTGATCAAGCCCTCTTCGACCGCGCCGCCTGGGGAGCCC
TTGGCTTTTCGCCGGCGGTCGCGGTCAATCTGTCGGCTTCGGCCCTGGTCGACCTTGATCTGCCCGACCGGGTCGGCGCC
AGCCTTCATAAGCACGGGGTACCGGCCAGCGCCCTGATCTTGGAAGTGACCGAGGCCAGCGCCATGCGCGACACCCGATC
AAGCATGGATGTGCTGACGCGCCTGCGCATCAAGGGGGCGGGGGTTTCGATCGATGACTTCGGCACCGGCTATTCCTCGC
TGGCCGAACTCCACCGCCTGCCCTTCACGGAGCTGAAGATCGACCGCTCCTTCACCATGGAGATCCACCACGACAAGGAT
TCCCGCATCATCGTCGACGCCATCATCCGCATGGCCCACGCCATGGGCCTGCGCGTGGTCGCCGAAGGGGTGGAAACCGC
CGAACAGCTGCGCATTCTGGCCGATATGGAGTGCGATGCCGCCCAGGGCTACCACTTCTGCCGAGCGGTACCCTATGACA
AGTTCATCGCTTTTCTGGAAAGCCGCGAACCCGCCTTCGCCGATCGGGTGATCTCGCCCTAG

Upstream 100 bases:

>100_bases
ACACCTTGCCAAACCGATCCTGACCCACAGCCCGGCCCCGCTCCGCAAGGGGCGCGGCCGTGACGGCTTCCCCAGTGGCT
GATCCGAGGAACAAGCAGGC

Downstream 100 bases:

>100_bases
AATCGGCGACCTGTGGATCGGCGATAATGGTGCCCCCGGGGAGAGTCGAACTCCCACTCCCTTACGGGAAACAGATTTTG
AGTCTGCCGCGTCTACCAGT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MPGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDADVIILDLSLGEDDGVEVLRWLADRRCPAGI
ALVSSFDERLLATALKVGQSYGLSMLKCLRKPVKPVDLREMLANRPRPQSAIAREELALGIEARELVLFYQPKIEVATGA
VSSAEALVRWNNGRRGLIFPGSFIPLAETSGLMSTMTDMVLDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGA
SLHKHGVPASALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRLPFTELKIDRSFTMEIHHDKD
SRIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDAAQGYHFCRAVPYDKFIAFLESREPAFADRVISP

Sequences:

>Translated_393_residues
MPGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDADVIILDLSLGEDDGVEVLRWLADRRCPAGI
ALVSSFDERLLATALKVGQSYGLSMLKCLRKPVKPVDLREMLANRPRPQSAIAREELALGIEARELVLFYQPKIEVATGA
VSSAEALVRWNNGRRGLIFPGSFIPLAETSGLMSTMTDMVLDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGA
SLHKHGVPASALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRLPFTELKIDRSFTMEIHHDKD
SRIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDAAQGYHFCRAVPYDKFIAFLESREPAFADRVISP
>Mature_392_residues
PGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDADVIILDLSLGEDDGVEVLRWLADRRCPAGIA
LVSSFDERLLATALKVGQSYGLSMLKCLRKPVKPVDLREMLANRPRPQSAIAREELALGIEARELVLFYQPKIEVATGAV
SSAEALVRWNNGRRGLIFPGSFIPLAETSGLMSTMTDMVLDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGAS
LHKHGVPASALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRLPFTELKIDRSFTMEIHHDKDS
RIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDAAQGYHFCRAVPYDKFIAFLESREPAFADRVISP

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=262, Percent_Identity=36.2595419847328, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=35.408560311284, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787541, Length=236, Percent_Identity=36.864406779661, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081845, Length=265, Percent_Identity=33.9622641509434, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=31.6872427983539, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=33.1983805668016, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=33.596837944664, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI226510982, Length=247, Percent_Identity=33.1983805668016, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=32.0833333333333, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=29.0836653386454, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=211, Percent_Identity=34.1232227488152, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082096, Length=275, Percent_Identity=28, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43155; Mature: 43024

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDADVIILDLSLG
CCCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
EDDGVEVLRWLADRRCPAGIALVSSFDERLLATALKVGQSYGLSMLKCLRKPVKPVDLRE
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHH
MLANRPRPQSAIAREELALGIEARELVLFYQPKIEVATGAVSSAEALVRWNNGRRGLIFP
HHHCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCCCCCCCEEECCCCEEEEEC
GSFIPLAETSGLMSTMTDMVLDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGA
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCHHHCC
SLHKHGVPASALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRL
HHHHCCCCHHHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHC
PFTELKIDRSFTMEIHHDKDSRIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDA
CCHHEEECCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AQGYHFCRAVPYDKFIAFLESREPAFADRVISP
CCCCHHHHCCCHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
PGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDADVIILDLSLG
CCCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
EDDGVEVLRWLADRRCPAGIALVSSFDERLLATALKVGQSYGLSMLKCLRKPVKPVDLRE
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHH
MLANRPRPQSAIAREELALGIEARELVLFYQPKIEVATGAVSSAEALVRWNNGRRGLIFP
HHHCCCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCCCCCCCEEECCCCEEEEEC
GSFIPLAETSGLMSTMTDMVLDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGA
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECCCCHHHCC
SLHKHGVPASALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRL
HHHHCCCCHHHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHC
PFTELKIDRSFTMEIHHDKDSRIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDA
CCHHEEECCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AQGYHFCRAVPYDKFIAFLESREPAFADRVISP
CCCCHHHHCCCHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]