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The map label for this gene is yibD [C]

Identifier: 83594737

GI number: 83594737

Start: 3925222

End: 3926280

Strand: Reverse

Name: yibD [C]

Synonym: Rru_A3408

Alternate gene names: 83594737

Gene position: 3926280-3925222 (Counterclockwise)

Preceding gene: 83594741

Following gene: 83594727

Centisome position: 90.2

GC content: 70.73

Gene sequence:

>1059_bases
ATGACCCTGGTTTCCGTCGTCCTTCCCGTCTACCAGGGCGCCCCTTGGATCCGTGGGGCGCTCGATTGCCTGGCCGCCCA
GACCCACCGCCCCCTGGAAATCCTGGTGGTCGATGACGCTTCAAGCGACGGCACGCCCGCCGTGGTCGAAGACTGGCGGG
CCCGGCATCCCGATCTTTCCGTACGGCTGATCGTGCGCCCGGAGAATGGCGGCCCGGGAGTGGCGCGCAATGACGCCCTC
GCCCTGGCGCGGGGGGCCTATGTCGCCTTCCTTGACGCCGATGACCGCTGCGTGCCCTGGCGCCTCGCCCGTCAGCTCGC
CCGGCTGGAGGCCGAGCCCGGGCTGGGATCGGTGGGGGCGTGGTATGACATGGTCGATGCGGACGGCACCCCGGTCGCCG
CTCGGCGCCTGAGCGTCACCGCTGGCGAAATGGCCTGGGCGGCCTTGATCCATCCGCCTTTTCTGTTGAGCACCCTGATG
ACCCGGCGGGCGCTCTGTCGGCCGGGGATCTTCGCCCCCCGCCATCAGGGCGAGGACGCGCCGGCCCAGCGCCGCTTGCT
GTGGCAGGCCCCGGCGGCGATGATCGAGGAGGTCTTGGTCACTTATCGCACCGATCCCCACCGCCCGCAGGATCCGCGCA
TGGGCGTGGCGATGGCCGAGGATCTGGCGCCGCTGACCGGTCCGCTGAGCGCGGCCGAGGCCTGGGCCCTGCATGACGCC
CTGCTGGCCTTTCCAAACAGGGTTACTCCGGCCGCGATCGCCGCCGTAAGCGGGCTGTTCACCCTGCTCGGGGTGTTTCG
CGGGCTGCGTCCGGCCTGGATGACGAGGCCCGAGTATAATCGGCTGTTCGAGGGCTATCTGGACTTGGCCGCGCCCTTCC
TGGCCGCCCACGGCGAGTCCCTGCTCGCTCCGCCATCGCCCCAGGCGCCCAGGGTCGCGCCGTGGATGGGACCTTGGGAG
GCGGAGTGGCGGGCCGGCGAGGCGCGATCGGATCGCCCCCGGCCAAAGGAGATCTTTCCTCCGGTCGGGGGCGATTCGCC
AAGCAAGCTTAGCGGTTGA

Upstream 100 bases:

>100_bases
TGCTAGCATGGCAGCCCGCCGCCAACGCCAGTCAGAAAATGCCCGCGCCCGATCCCACCCTGCCCATAGGCCCGATTCCA
TCCTGCCCATAGGAGCGACC

Downstream 100 bases:

>100_bases
GAACCTTGGCAACCCGATTGTCGCGCAGGCGATAGGCGTCGGGCATGCCACGGCCCAGCAACGGCCGCAGGTACATCAGG
AAATCGGTGGTCACGTCATG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MTLVSVVLPVYQGAPWIRGALDCLAAQTHRPLEILVVDDASSDGTPAVVEDWRARHPDLSVRLIVRPENGGPGVARNDAL
ALARGAYVAFLDADDRCVPWRLARQLARLEAEPGLGSVGAWYDMVDADGTPVAARRLSVTAGEMAWAALIHPPFLLSTLM
TRRALCRPGIFAPRHQGEDAPAQRRLLWQAPAAMIEEVLVTYRTDPHRPQDPRMGVAMAEDLAPLTGPLSAAEAWALHDA
LLAFPNRVTPAAIAAVSGLFTLLGVFRGLRPAWMTRPEYNRLFEGYLDLAAPFLAAHGESLLAPPSPQAPRVAPWMGPWE
AEWRAGEARSDRPRPKEIFPPVGGDSPSKLSG

Sequences:

>Translated_352_residues
MTLVSVVLPVYQGAPWIRGALDCLAAQTHRPLEILVVDDASSDGTPAVVEDWRARHPDLSVRLIVRPENGGPGVARNDAL
ALARGAYVAFLDADDRCVPWRLARQLARLEAEPGLGSVGAWYDMVDADGTPVAARRLSVTAGEMAWAALIHPPFLLSTLM
TRRALCRPGIFAPRHQGEDAPAQRRLLWQAPAAMIEEVLVTYRTDPHRPQDPRMGVAMAEDLAPLTGPLSAAEAWALHDA
LLAFPNRVTPAAIAAVSGLFTLLGVFRGLRPAWMTRPEYNRLFEGYLDLAAPFLAAHGESLLAPPSPQAPRVAPWMGPWE
AEWRAGEARSDRPRPKEIFPPVGGDSPSKLSG
>Mature_351_residues
TLVSVVLPVYQGAPWIRGALDCLAAQTHRPLEILVVDDASSDGTPAVVEDWRARHPDLSVRLIVRPENGGPGVARNDALA
LARGAYVAFLDADDRCVPWRLARQLARLEAEPGLGSVGAWYDMVDADGTPVAARRLSVTAGEMAWAALIHPPFLLSTLMT
RRALCRPGIFAPRHQGEDAPAQRRLLWQAPAAMIEEVLVTYRTDPHRPQDPRMGVAMAEDLAPLTGPLSAAEAWALHDAL
LAFPNRVTPAAIAAVSGLFTLLGVFRGLRPAWMTRPEYNRLFEGYLDLAAPFLAAHGESLLAPPSPQAPRVAPWMGPWEA
EWRAGEARSDRPRPKEIFPPVGGDSPSKLSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI57770468, Length=107, Percent_Identity=36.4485981308411, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790044, Length=96, Percent_Identity=36.4583333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38154; Mature: 38023

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLVSVVLPVYQGAPWIRGALDCLAAQTHRPLEILVVDDASSDGTPAVVEDWRARHPDLS
CCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCE
VRLIVRPENGGPGVARNDALALARGAYVAFLDADDRCVPWRLARQLARLEAEPGLGSVGA
EEEEEEECCCCCCCCCCCHHHEECCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHH
WYDMVDADGTPVAARRLSVTAGEMAWAALIHPPFLLSTLMTRRALCRPGIFAPRHQGEDA
HHHHHCCCCCCHHHHEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PAQRRLLWQAPAAMIEEVLVTYRTDPHRPQDPRMGVAMAEDLAPLTGPLSAAEAWALHDA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
LLAFPNRVTPAAIAAVSGLFTLLGVFRGLRPAWMTRPEYNRLFEGYLDLAAPFLAAHGES
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
LLAPPSPQAPRVAPWMGPWEAEWRAGEARSDRPRPKEIFPPVGGDSPSKLSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLVSVVLPVYQGAPWIRGALDCLAAQTHRPLEILVVDDASSDGTPAVVEDWRARHPDLS
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCE
VRLIVRPENGGPGVARNDALALARGAYVAFLDADDRCVPWRLARQLARLEAEPGLGSVGA
EEEEEEECCCCCCCCCCCHHHEECCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHH
WYDMVDADGTPVAARRLSVTAGEMAWAALIHPPFLLSTLMTRRALCRPGIFAPRHQGEDA
HHHHHCCCCCCHHHHEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PAQRRLLWQAPAAMIEEVLVTYRTDPHRPQDPRMGVAMAEDLAPLTGPLSAAEAWALHDA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
LLAFPNRVTPAAIAAVSGLFTLLGVFRGLRPAWMTRPEYNRLFEGYLDLAAPFLAAHGES
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
LLAPPSPQAPRVAPWMGPWEAEWRAGEARSDRPRPKEIFPPVGGDSPSKLSG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]