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The map label for this gene is yedQ [H]

Identifier: 83594720

GI number: 83594720

Start: 3908632

End: 3909714

Strand: Reverse

Name: yedQ [H]

Synonym: Rru_A3391

Alternate gene names: 83594720

Gene position: 3909714-3908632 (Counterclockwise)

Preceding gene: 83594721

Following gene: 83594719

Centisome position: 89.82

GC content: 64.91

Gene sequence:

>1083_bases
GTGAGCCCTCCTCGGCTCGAGGATCCCATCACGAAATCAGAGGCCGGCGTTTCCCCCATGCTTTCCCCCCATGAGGCCAG
GGACCGCCATCGCCACGATGTCATCACTCGCAGCCTCCTTGTCGGCGCCTTGCTCTGCGCGATCTTCGCGCCTTTCGATT
TCTTTCTCACCGGCTATTGGGTCGACGCGACGGTCGAGGCGCTGGGAGCGGCGACGCTGCTTGCGCTGGGGGTCTTTCTG
CGCCGGGGCGGCGATCGGCTGGTCGCCGCCCTGATCGGCCATATCATCGGCGGGGCGGTGATTCTGACCGTGGTGTTGGG
GGGGAAGGCCCAAGACGCGGTTTTTTCCTGGGCCGTGCTGTTTCCGGTGCTTCCCTTCTTCGTTCTCGGCCAACGGCTGG
GGCTGTTGGTCTCCATCGTGTTCGCGACCACGGCGACGGTCGGCGTCACCATCCTGGCCGTCCTTGACGGAGCGCAAGGC
TTCTCGTGGATCGCGCCCTTCAATCTGGCCGGTGCCCTGGCCGGCTGCACGGTGCTGGCTTATTTCTATGAAGGAACCCG
CGCCAAAGCGGCGCGGCAGCTTGAAACCCTGGCGAAATCCGATCCGCTGACCGGTCTTGCCAACCGCCGGGGCCTGCTTG
ACGCCTTCGGCGGCGCCGTTCTGACGCGCTCCCGGGCGCCGCACCGGCTTTCGCTGCTGGTCCTTGATCTCGATCATTTC
AAAAGCATCAATGACCGCTACGGCCACGAGGCCGGCGATGGGGTGCTTTGTCATGTGGCGCATGTGATCAAGGGGATGAT
ACGCGCCAACGACCTGATCGCACGCATCGGCGGCGAGGAATTCGCCCTTTTGCTGCCCGATACGGATTTGGCCGGGGCCC
GCGAGGTGGCCGAAAAGATCCGCAAGGCCATCGAAAGCACCGCCCTGATCGGCCCTGGCGGCTCCTTGTCCGTCACCGTT
AGCATCGGCGTCGCCGAACTCGATCCCCAATACCCGGACTTCGCCGCGCTTTTCTCTTCCGCCGACCACCGGCTGTATCA
GGCCAAGAAGGCCGGCCGCAATCGGGTGAGCGCCGCCACCTGA

Upstream 100 bases:

>100_bases
CTGACGGAGGCGCCCCTGTGATCATCGCCCGCCGATCGGGCGAGACCGGTAATTTCCGCCGATCGGGCGAGACCGATAGA
CCGCTGAGAGCCGGTGTGCG

Downstream 100 bases:

>100_bases
CCCGCCGGCACCGTCGTTGCGAAACGCTCCTAAAAGGGGATTCTCCACCTCGACGACACCCGGAGAGGTGGTCGGGGGCG
ACACGTGAAACGAGAATGCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFAPFDFFLTGYWVDATVEALGAATLLALGVFL
RRGGDRLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGAQG
FSWIAPFNLAGALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHF
KSINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSLSVTV
SIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRVSAAT

Sequences:

>Translated_360_residues
MSPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFAPFDFFLTGYWVDATVEALGAATLLALGVFL
RRGGDRLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGAQG
FSWIAPFNLAGALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHF
KSINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSLSVTV
SIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRVSAAT
>Mature_359_residues
SPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFAPFDFFLTGYWVDATVEALGAATLLALGVFLR
RGGDRLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGAQGF
SWIAPFNLAGALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFK
SINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSLSVTVS
IGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRVSAAT

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=45.5621301775148, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787802, Length=299, Percent_Identity=33.1103678929766, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=36.094674556213, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=42.1965317919075, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=37.8698224852071, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=33.7209302325581, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=37.9746835443038, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=31.1258278145695, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=34.1463414634146, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=32.5301204819277, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=34.1463414634146, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=28.8461538461538, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=127, Percent_Identity=37.007874015748, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 38123; Mature: 37991

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFAPFDFFLTGYW
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDATVEALGAATLLALGVFLRRGGDRLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGAQGFSWIAPFNLAGALAGCTVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHH
YFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHF
HHHHCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCHHHCCCCCCCEEEEEEEEHHHH
KSINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
RKAIESTALIGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRVSAAT
HHHHHHCEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFAPFDFFLTGYW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDATVEALGAATLLALGVFLRRGGDRLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGAQGFSWIAPFNLAGALAGCTVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHH
YFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHF
HHHHCHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCHHHCCCCCCCEEEEEEEEHHHH
KSINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
RKAIESTALIGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRVSAAT
HHHHHHCEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA