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The map label for this gene is yciR [C]

Identifier: 83594674

GI number: 83594674

Start: 3857249

End: 3859366

Strand: Direct

Name: yciR [C]

Synonym: Rru_A3345

Alternate gene names: 83594674

Gene position: 3857249-3859366 (Clockwise)

Preceding gene: 83594672

Following gene: 83594675

Centisome position: 88.61

GC content: 66.24

Gene sequence:

>2118_bases
ATGACCCCTCCGGCATCCTCTTCCCCATGTTCCTCGTCCGATAAGCGCAACCGCGCGGTCCCATCCGCCAAAGCCCTTAT
GGTCTGGCGGGCGGGCCCCGACGGTCGCCCCCTTGACCCCAGCCAATTCCCCCAGGATCCCCCGGCGCGGCGCGACGGCG
ATGGGGGCGGGGCCGAGGCCTGGTTGAACCTTGTCCATCCCGAAGAGCGCGAGGCGGTCTTGCTGCTCTGGCGCCGGGCG
CTGCGCGAAGGCGAAGAGTTCGAAGCCCGCTACCGACTGCATCGCGGGCTTTCGGGATACCGCTGGGCCCTGGGCCAGGG
CCGCCCCTTGCGCGGCGACGATGGCGAAGTGCGCGAATGGATCGGCACCGTCGTGGATATTCACGACCACATGGAGGCCG
AACGAACCATCGCCCTGAGCGAGGAACGCCTGCGCCTCGCCCTCGACAGCGCCGATCTGGGGGTTTGGGAATGCACCATC
GCCACCAATCAATGGTGGTTTTCCGAAGCGGCGCTGCGGATCCTTGGCTGTCCCCCCGACGCCGAAACGTCCATTGAAAC
GGTCATGGGGGCGATCCATTCCGATGATCTCGACGGCCTGCGCGCCCGTTGGCATGCCGCCCGCACCGGCCGTGCCCGCG
ACCGGATGGAAGGGGAGTTCCGCATTCAACGCGGCGGCGGCAGGCTCGGCTGGATCGCCTGTTCGGCCCGATTGGTCGCC
GATGACGGCAAGGCCGTTACCCGCATGCTGGGCACGCTCCGCGATATCACCAAGACCCGTCTTCAGCGCGAGAAGCTCTA
TCACCTCGCCCATTTCGATCCGCTGACCGGCTTGCCCAATCGCCATGAGATGATCACCCGCACCCAGGCCACCCTGGCGA
GCGGCGGCGCCGCCGGCGGTGCCGGAGCGATCTTGCTGCTCGATCTCGACGGCTTCAAGGAAGCCAACGACACCCTGGGG
CAGGCGACAGGCGATGCCCTGCTCAAGCGCATCGCCCATCGTCTGGTTTCCAGTCTTCCCGCCGACAGCCTGATCGGCCG
GGTCGGCGGCGACGAATTCCTGGTGGTTGTTCCCGGGGTGGCCGAGCAATGGACGGCGACGCGGATCGCCGACGGCCTTT
ACGACGTGCTGACCGTTCCCTTCGTTATCGGCGATCGGCGCATTCCGTTAAGCGGCCGCATCGGCATCGCCTTGGCGCCC
CGCGATGGCACCTCGGCCCAGGATCTGATGACCCATGCCGAACTGGCCTTGCAGGAAACCAAGACCATCTCGGGCTGCGT
CACCCGGTTCTTTTCGCCGCGCCTGCACGACGAGGCGCGCGAACGCCAGGACATGGGACTTGAATTGCGCCGCGCCACCG
ACAACGGCGAGTTCGAGCTGTTCTATCAGCCGCAGATCCGCCTGAGCGACCGGGCCGTCGTCGGCGCCGAGGCGTTGTTG
CGCTGGCGGCATCCGACGCGCGGCGTGATGCCGCCCGCCGCCTTCCTTCATGTCCTCAAACGCGGCCCCTTGGCCGGCGA
GGTCGGCGAATGGGTGGTCGCCAAGGCCTGTGCCGATGCCGCCGGTCTACTCAACGCCGGCTCGCGAATACGCATGGCAG
TCAATTTATTCTCGGCCCAGTTCAAGGCCGGCACCGTCGACGCCACGGTGCGCCGCTCGCTTCTTGAAAGCGGCCTGCCC
GCCGAGTTGCTGGAACTCGAAATCACCGAAAAAGTCACCCTCGACCGCGACGAGGGCATTCTTACCTGCCTCAAGGGCTT
GCGCGACCTGGGCTGCGGCGTCGCCTTCGATGACTACGGCACCGGCTACGCCTCGCTCAGCATGCTCAAGCGCTATCCGC
TGACCCGCCTGAAGATCGACCGGGCCTTCGTCCAACATCTGGCCGAGTCACCCAAGGACGGTGCCATCGTCCGCGCCGTG
TTGTCGCTGGGCAATACCTTCGGCCTGTCGGTCACCGCCGAGGGGATCGAAGAAGAGGAACAGGAAAAGCTGCTGCTTGG
CCAGGGATGCGACGAGGGTCAAGGGTATTTTTTCGGCCGGCCGATGCCCTTGGCCGATTTCATCCAATTCCTGGCCCGGG
TGAAGAAAAACCCCGGCGAATTCCCCACCCCCGCCTGA

Upstream 100 bases:

>100_bases
GGGAGGCGGACCTTCAAGGACTAATCGGTCAGGGGGCCCCGCGAGACTCCGGCAAAACCCGCCCCGGAGGCGGCGCTATT
TTTGAAGGGGGGCCCGGCAC

Downstream 100 bases:

>100_bases
CCGCCGGAGGCGCCCCCCCGGGGTCGCCTTTTGGCCGGGCGGGGGAAAGGATCGGGGAGCGAGGGCGCTCCTTTCGCTTT
CGATACGACCTTCCACGCTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MTPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPARRDGDGGGAEAWLNLVHPEEREAVLLLWRRA
LREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREWIGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTI
ATNQWWFSEAALRILGCPPDAETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVA
DDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGGAGAILLLDLDGFKEANDTLG
QATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAP
RDGTSAQDLMTHAELALQETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALL
RWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQFKAGTVDATVRRSLLESGLP
AELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAV
LSLGNTFGLSVTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGEFPTPA

Sequences:

>Translated_705_residues
MTPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPARRDGDGGGAEAWLNLVHPEEREAVLLLWRRA
LREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREWIGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTI
ATNQWWFSEAALRILGCPPDAETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVA
DDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGGAGAILLLDLDGFKEANDTLG
QATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAP
RDGTSAQDLMTHAELALQETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALL
RWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQFKAGTVDATVRRSLLESGLP
AELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAV
LSLGNTFGLSVTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGEFPTPA
>Mature_704_residues
TPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPARRDGDGGGAEAWLNLVHPEEREAVLLLWRRAL
REGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREWIGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIA
TNQWWFSEAALRILGCPPDAETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVAD
DGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGGAGAILLLDLDGFKEANDTLGQ
ATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPR
DGTSAQDLMTHAELALQETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALLR
WRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQFKAGTVDATVRRSLLESGLPA
ELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVL
SLGNTFGLSVTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGEFPTPA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=454, Percent_Identity=32.15859030837, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI87081921, Length=518, Percent_Identity=30.8880308880309, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=27.0983213429257, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=32.2834645669291, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=29.5546558704453, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI87081845, Length=279, Percent_Identity=29.3906810035842, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=29.811320754717, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1787055, Length=449, Percent_Identity=23.162583518931, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=30.327868852459, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=304, Percent_Identity=28.6184210526316, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788381, Length=678, Percent_Identity=23.1563421828909, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=26.8595041322314, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87082096, Length=246, Percent_Identity=29.6747967479675, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788956, Length=262, Percent_Identity=29.7709923664122, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081881, Length=110, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI145693134, Length=122, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787262, Length=86, Percent_Identity=36.046511627907, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=27.9761904761905, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 77199; Mature: 77068

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPARRDGDGGGAEA
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
WLNLVHPEEREAVLLLWRRALREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREW
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
IGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPD
HHHHHHHHHHHHHHHHHEECHHHHEEEECCCCCCEEEEEEECCCCCHHHHHHEEECCCCC
AETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCCEEEEEEEEEEEEE
DDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
AGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGV
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCC
AEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELALQET
CHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
KTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALL
HHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCEEECCCHHHHHHHHH
RWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQ
HHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
FKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYG
CCCCCCHHHHHHHHHHCCCCHHHHHEEEHHHEECCCCCHHHHHHHHHHHHCCCCEECCCC
TGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEGIEEEE
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCHHH
QEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGEFPTPA
HHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPARRDGDGGGAEA
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
WLNLVHPEEREAVLLLWRRALREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREW
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
IGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPD
HHHHHHHHHHHHHHHHHEECHHHHEEEECCCCCCEEEEEEECCCCCHHHHHHEEECCCCC
AETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEECCCEEEEEEEEEEEEE
DDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
AGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGV
CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCC
AEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELALQET
CHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
KTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALL
HHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCEEECCCHHHHHHHHH
RWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQ
HHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHH
FKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYG
CCCCCCHHHHHHHHHHCCCCHHHHHEEEHHHEECCCCCHHHHHHHHHHHHCCCCEECCCC
TGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEGIEEEE
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCHHH
QEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGEFPTPA
HHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]