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The map label for this gene is vapI [H]

Identifier: 83594641

GI number: 83594641

Start: 3816283

End: 3816618

Strand: Reverse

Name: vapI [H]

Synonym: Rru_A3311

Alternate gene names: 83594641

Gene position: 3816618-3816283 (Counterclockwise)

Preceding gene: 83594642

Following gene: 83594640

Centisome position: 87.68

GC content: 59.82

Gene sequence:

>336_bases
ATGTCGATACCAGCCGGAAAAAGTAGCGTGCTTGTCCATCCCGGTCGGTTGCTGCGCCGTGAAATGGAGGCCCGTGGTCT
ATCCGCGACTGCCCTTGCTGGCGCGCTACATGTCTCACCTGAACGGATCCGGGGCATTATTAACGGCAAGCGCCCTATCA
CTTACGATACCGCTCTCCGCCTCGGGCGGTACCTCGGGACTGGTCCAGAGCTTTGGGCAGGGATGCAGCGTGATTACAAC
CTCCTTGCCGCTCAACTGGCACATGGTGCGCAGATAGAGCGTGAGGTACAGCCTGCCCCCCGTGATTGGGACCTTCTGGA
ACCCTTGGCCGAATGA

Upstream 100 bases:

>100_bases
TGTCAGAAAGCGGTAGCCTAGGCATCCAGGGGGCTTTAAGTCGGTTTTATCGCCTGTATCTGTGATGATTGAATGATCCA
CGATTGAAGGGGGCAAAGAA

Downstream 100 bases:

>100_bases
GCTTCCGGTAGCCTCTGCGTCCTTGCCAATCCTACCTCAAACTGTTACACCAGGGACCAGTCAGGACTGAAGAAAGTCTA
AGGTTTCTGCGGGGTTAGGG

Product: plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSIPAGKSSVLVHPGRLLRREMEARGLSATALAGALHVSPERIRGIINGKRPITYDTALRLGRYLGTGPELWAGMQRDYN
LLAAQLAHGAQIEREVQPAPRDWDLLEPLAE

Sequences:

>Translated_111_residues
MSIPAGKSSVLVHPGRLLRREMEARGLSATALAGALHVSPERIRGIINGKRPITYDTALRLGRYLGTGPELWAGMQRDYN
LLAAQLAHGAQIEREVQPAPRDWDLLEPLAE
>Mature_110_residues
SIPAGKSSVLVHPGRLLRREMEARGLSATALAGALHVSPERIRGIINGKRPITYDTALRLGRYLGTGPELWAGMQRDYNL
LAAQLAHGAQIEREVQPAPRDWDLLEPLAE

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12175; Mature: 12044

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPAGKSSVLVHPGRLLRREMEARGLSATALAGALHVSPERIRGIINGKRPITYDTALR
CCCCCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
LGRYLGTGPELWAGMQRDYNLLAAQLAHGAQIEREVQPAPRDWDLLEPLAE
HHHHHCCCHHHHHCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
SIPAGKSSVLVHPGRLLRREMEARGLSATALAGALHVSPERIRGIINGKRPITYDTALR
CCCCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
LGRYLGTGPELWAGMQRDYNLLAAQLAHGAQIEREVQPAPRDWDLLEPLAE
HHHHHCCCHHHHHCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]