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The map label for this gene is rpoE [H]

Identifier: 83594617

GI number: 83594617

Start: 3782923

End: 3783759

Strand: Direct

Name: rpoE [H]

Synonym: Rru_A3287

Alternate gene names: 83594617

Gene position: 3782923-3783759 (Clockwise)

Preceding gene: 83594616

Following gene: 83594618

Centisome position: 86.91

GC content: 66.07

Gene sequence:

>837_bases
ATGACCCATCGCTCCGCGCCCCGCAACGGGCTCGCCTCGGCCAGCTTTTCCCAGTCCCCGGCCCCGCCTGTGGCGCCCGG
CGCCACGACCTCCATTGCGCCCGACCCCGACCTGGAAGACGAGGCGCTGGCTTGCGACGGCTCGTCCCAGGCCCCCTCCG
ACACCGAAGAGGCGCGAGAGGAGGCCGAGACCTCGGAAAACCAGTTGTTCGAGAACCAGAACCGCGATGGGGGCGAGGCG
CCGGCCCGCCGCCGGGACCGCGAGAGTCTGCCGCCGGCGGTTTTCAACAAGCTGCTCATCGACAGCCTGCCCCATATGCG
CGCCTTCGCCCGCTCACTGACCGACGACCGGGCCCTGGCCGATGATCTGGCCCAGGAAGCCGCCACCCGCGCCCTGGCCA
ACCGCGACAGCTATCACGCCGGAACCAATTTCCGCGCCTGGATCTTCACCATCGTCCGCAACTGTTTTTATTCCGAGCAT
CGTCGCAAGTGGCGTCGCATGGAAAAGGGCAATGAAGACGCGATGATCCGCGCCGGCGCCCCGGAAACCCAGGAAAGCGG
CCTGCGCATGGAGGATTTCAAGCGCGGCTTCACCTTGCTGTCGGAAGAACAGCGCGAAGCCCTGGTTCTGGTCGGAGCCT
GCGGCTTTGATTATCAGCAAGCCGCCGAGATCGCCGGCTGCGCCGTCGGCACCATGAAAAGCCGTGTTTCGCGGGCCCGG
GCCGAATTGCGCACCATGCTCGACGAGGACGCCCTCAAGGGCGACCGCTCCGACTTCGCAAAATTGGCCAAGGGAGGCTT
CGAAGATCAGTTGGATCGGTCCTTGGGCCTGAAATGA

Upstream 100 bases:

>100_bases
AGGACGCCTCCGCCGGAACCGGGGACCCGCCCTCGGATGCCGCGGAGGCCACCCCCCAGGACGCCCCCCCCGCACGCGAC
CGCTGACGGAAGGCTTTTCC

Downstream 100 bases:

>100_bases
CGGTGGGCTTGACGGGTGCATGGGTTTGAGGTGACGGTTCCGCCCGGCAAACCGGGGCAGAGTCGTGGAATAGGGCGTGT
GGGGAAGGGGGAGCGATGAC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTHRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQAPSDTEEAREEAETSENQLFENQNRDGGEA
PARRRDRESLPPAVFNKLLIDSLPHMRAFARSLTDDRALADDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEH
RRKWRRMEKGNEDAMIRAGAPETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRAR
AELRTMLDEDALKGDRSDFAKLAKGGFEDQLDRSLGLK

Sequences:

>Translated_278_residues
MTHRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQAPSDTEEAREEAETSENQLFENQNRDGGEA
PARRRDRESLPPAVFNKLLIDSLPHMRAFARSLTDDRALADDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEH
RRKWRRMEKGNEDAMIRAGAPETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRAR
AELRTMLDEDALKGDRSDFAKLAKGGFEDQLDRSLGLK
>Mature_277_residues
THRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQAPSDTEEAREEAETSENQLFENQNRDGGEAP
ARRRDRESLPPAVFNKLLIDSLPHMRAFARSLTDDRALADDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEHR
RKWRRMEKGNEDAMIRAGAPETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRARA
ELRTMLDEDALKGDRSDFAKLAKGGFEDQLDRSLGLK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 30641; Mature: 30510

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQAPSDTEEARE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
EAETSENQLFENQNRDGGEAPARRRDRESLPPAVFNKLLIDSLPHMRAFARSLTDDRALA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCHHHHHH
DDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEHRRKWRRMEKGNEDAMIRAGA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
PETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRAR
CCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
AELRTMLDEDALKGDRSDFAKLAKGGFEDQLDRSLGLK
HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
THRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQAPSDTEEARE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHH
EAETSENQLFENQNRDGGEAPARRRDRESLPPAVFNKLLIDSLPHMRAFARSLTDDRALA
HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCHHHHHH
DDLAQEAATRALANRDSYHAGTNFRAWIFTIVRNCFYSEHRRKWRRMEKGNEDAMIRAGA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
PETQESGLRMEDFKRGFTLLSEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRAR
CCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
AELRTMLDEDALKGDRSDFAKLAKGGFEDQLDRSLGLK
HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]