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The map label for this gene is kdsB [H]

Identifier: 83594493

GI number: 83594493

Start: 3654705

End: 3655505

Strand: Reverse

Name: kdsB [H]

Synonym: Rru_A3163

Alternate gene names: 83594493

Gene position: 3655505-3654705 (Counterclockwise)

Preceding gene: 83594501

Following gene: 83594492

Centisome position: 83.98

GC content: 68.79

Gene sequence:

>801_bases
ATGATCGGGGCTTCCGCCGTTTCCGCCAGTCGAGACCCGACCATGACCCAATCGCCGTCCCTCGCCGCCGCCGCCCCCAT
CGTCGTCATTCCCGCTCGCATGGCCTCGACCCGCTTGCCGGGCAAGCCGCTGGCCGACATCCATGGGGTGCCGATGATCG
TTCAGGTTTGGCGCCGGGCGATGGAGGCGGGGATCGGGCCGGTGCTGGTTGCCGCCGCCGAGGACGAGATCGCCCAGGCG
GTGCGCGCCGCTGGCGGCAATGCCGTGCTGACCGATCCCGATCTGCCCTCGGGGTCGGATCGGGTGTGGCAGGCCGTGGA
GCGCTTCGATCCGGCCGGCCGCCACGCCGTGGTGGTCAATGTCCAGGGCGATCTGCCGACCCTGGATCCGGGCCTGATCA
TCCGCGCCGTCGAAACCGTGCTGGCCGAGCCCGATATCGCGCTTTCCACCCTGATCTGCGAGATCACGCGCGAGGAGGAA
CGGACCAATCCCAATGTGGTGAAGGCGGTGGTCGGCCTGGCGGAAGGGCAGACCCGGGGCCGGGCGCTCTATTTCAGCCG
GGCGACCGTGCCCCATGGCCCCGGACCCCATTACCATCATATCGGCCTTTACGCCTATCGGCGGACGACGCTGGGCGCCT
TTGTCAGCCTGCCGCCCGGGGTGCTGGAACGGCGCGAGAAGCTTGAACAATTGCGCGCCCTGGAAAACCACATGCGCATC
GAGGCCGCCCTCGTTGACACCGTTCCGCTCGGTGTCGATACTGCCGAGGATCTGGAGCGGGCCCGCGCGCTGCTTGGCTG
A

Upstream 100 bases:

>100_bases
CAATTCATTCTTAATTTCATACAGAGGAAAATTGCGGTTCCTAAGATCGATAGAGTCGATCGTGTGTTTTTTGAACTGGC
GGTGGCGGGCGGTGGCGACC

Downstream 100 bases:

>100_bases
CCGGGCGCGGCGGGGCTTGCTCCCTTGCCCTCCGGAGTTCTGTCCCGTCCATGAGCGATCCCAATCAGACCGTGGCCTTC
CAGGGCCTGCCCGGCGCCTA

Product: 3-deoxy-manno-octulosonate cytidylyltransferase

Products: NA

Alternate protein names: CMP-2-keto-3-deoxyoctulosonic acid synthase; CKS; CMP-KDO synthase [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MIGASAVSASRDPTMTQSPSLAAAAPIVVIPARMASTRLPGKPLADIHGVPMIVQVWRRAMEAGIGPVLVAAAEDEIAQA
VRAAGGNAVLTDPDLPSGSDRVWQAVERFDPAGRHAVVVNVQGDLPTLDPGLIIRAVETVLAEPDIALSTLICEITREEE
RTNPNVVKAVVGLAEGQTRGRALYFSRATVPHGPGPHYHHIGLYAYRRTTLGAFVSLPPGVLERREKLEQLRALENHMRI
EAALVDTVPLGVDTAEDLERARALLG

Sequences:

>Translated_266_residues
MIGASAVSASRDPTMTQSPSLAAAAPIVVIPARMASTRLPGKPLADIHGVPMIVQVWRRAMEAGIGPVLVAAAEDEIAQA
VRAAGGNAVLTDPDLPSGSDRVWQAVERFDPAGRHAVVVNVQGDLPTLDPGLIIRAVETVLAEPDIALSTLICEITREEE
RTNPNVVKAVVGLAEGQTRGRALYFSRATVPHGPGPHYHHIGLYAYRRTTLGAFVSLPPGVLERREKLEQLRALENHMRI
EAALVDTVPLGVDTAEDLERARALLG
>Mature_266_residues
MIGASAVSASRDPTMTQSPSLAAAAPIVVIPARMASTRLPGKPLADIHGVPMIVQVWRRAMEAGIGPVLVAAAEDEIAQA
VRAAGGNAVLTDPDLPSGSDRVWQAVERFDPAGRHAVVVNVQGDLPTLDPGLIIRAVETVLAEPDIALSTLICEITREEE
RTNPNVVKAVVGLAEGQTRGRALYFSRATVPHGPGPHYHHIGLYAYRRTTLGAFVSLPPGVLERREKLEQLRALENHMRI
EAALVDTVPLGVDTAEDLERARALLG

Specific function: Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria [H]

COG id: COG1212

COG function: function code M; CMP-2-keto-3-deoxyoctulosonic acid synthetase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsB family [H]

Homologues:

Organism=Escherichia coli, GI1787147, Length=249, Percent_Identity=44.578313253012, Blast_Score=173, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329
- InterPro:   IPR004528 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: =2.7.7.38 [H]

Molecular weight: Translated: 28315; Mature: 28315

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGASAVSASRDPTMTQSPSLAAAAPIVVIPARMASTRLPGKPLADIHGVPMIVQVWRRA
CCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCHHHHCCCCCCCCHHHCCCHHHHHHHHHH
MEAGIGPVLVAAAEDEIAQAVRAAGGNAVLTDPDLPSGSDRVWQAVERFDPAGRHAVVVN
HHCCCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEE
VQGDLPTLDPGLIIRAVETVLAEPDIALSTLICEITREEERTNPNVVKAVVGLAEGQTRG
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
RALYFSRATVPHGPGPHYHHIGLYAYRRTTLGAFVSLPPGVLERREKLEQLRALENHMRI
EEEEEECCCCCCCCCCCCEEEEHEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAALVDTVPLGVDTAEDLERARALLG
HHHHHHHCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIGASAVSASRDPTMTQSPSLAAAAPIVVIPARMASTRLPGKPLADIHGVPMIVQVWRRA
CCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCHHHHCCCCCCCCHHHCCCHHHHHHHHHH
MEAGIGPVLVAAAEDEIAQAVRAAGGNAVLTDPDLPSGSDRVWQAVERFDPAGRHAVVVN
HHCCCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEE
VQGDLPTLDPGLIIRAVETVLAEPDIALSTLICEITREEERTNPNVVKAVVGLAEGQTRG
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
RALYFSRATVPHGPGPHYHHIGLYAYRRTTLGAFVSLPPGVLERREKLEQLRALENHMRI
EEEEEECCCCCCCCCCCCEEEEHEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAALVDTVPLGVDTAEDLERARALLG
HHHHHHHCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA