BacMap

Definition	Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession	NC_007643
Length	4,352,825

Click here to switch to the map view.

The map label for this gene is lolD [H]

Identifier: 83594480

GI number: 83594480

Start: 3635171

End: 3635893

Strand: Reverse

Name: lolD [H]

Synonym: Rru_A3150

Alternate gene names: 83594480

Gene position: 3635893-3635171 (Counterclockwise)

Preceding gene: 83594481

Following gene: 83594479

Centisome position: 83.53

GC content: 68.46

Gene sequence:

>723_bases
ATGGATCGGGTGGTTCTGCTTGATGGGGTGGTCGCCGGCAAGGGCGAGCGCTTCCGCGTGCGCATGAGCGGTTTTCGCGT
CGGCGCCGGTGAAACCGTGGCGATCGTCGGCAAAAGCGGCTCGGGCAAAAGTACCATCCTTGACACCATCGCTGGCATCT
TGCGGCCGATCGAGGTCAGGGCCTTCCGGCTGATGAGCGGGGCGGCGAGCGTTGATATGGGCAAGCTGTGGGCGGCCGAT
GACCAACGCGCCCTGCGCGCCGCCCGCGCCCGCCATATCGGTTATGTGCTGCAAACCGGCGGCCTCGCCCCCTTTCTCAG
CATCGAGCAGAACATCGCGTTGCCGCTGTGGCGCGACGGCGGACAGGATCCGGGCTGGACCCGCCATCTGATGGAAAAGC
TGGGCATCGCCGGGCTGGCGCGACGGCTGCCCCGCGACGTTTCGGTGGGCGAGCGCCAGCGCGCCGCCATCGCCCGCGCC
CTGGCGGGCAAGCCCGATCTCGTGCTGGCCGACGAACCCACCGCCTCGCTCGACAGCGCCCAGGCCGAAGCGACCATGGC
CCTGTTGACGGCGCTCGCCCGCGAAACCGGGGTGGCCCTGCTGATGGTCACCCATGACCGCGCTTTGGTCGAGCGCCACG
GCTTTCGCATGGCGATCTGCCAATCCGCCGACAACGGTCAATCCGATCTGCTTTCCGATCCGGCTGCCGAGGGGGTGCCA
TGA

Upstream 100 bases:

>100_bases
GAAATACCATGATGATAACGACCACTGGATCGCGCTGACCCCCGGGGCCGAGCCGGGCGATACGGTGTTTCCCGTTCCCA
TCGATTCCCTGCCCTAAGCC

Downstream 100 bases:

>100_bases
CAGCGGGAGCCTGGCGTTATCTGCCGCGCATCGCCTTTGCCGAATTGCGCGGCGAATGGCCGGTCGCCATCGCCATCTGT
CTGGCGATCATGGCGGTTAC

Product: ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDRVVLLDGVVAGKGERFRVRMSGFRVGAGETVAIVGKSGSGKSTILDTIAGILRPIEVRAFRLMSGAASVDMGKLWAAD
DQRALRAARARHIGYVLQTGGLAPFLSIEQNIALPLWRDGGQDPGWTRHLMEKLGIAGLARRLPRDVSVGERQRAAIARA
LAGKPDLVLADEPTASLDSAQAEATMALLTALARETGVALLMVTHDRALVERHGFRMAICQSADNGQSDLLSDPAAEGVP

Sequences:

>Translated_240_residues
MDRVVLLDGVVAGKGERFRVRMSGFRVGAGETVAIVGKSGSGKSTILDTIAGILRPIEVRAFRLMSGAASVDMGKLWAAD
DQRALRAARARHIGYVLQTGGLAPFLSIEQNIALPLWRDGGQDPGWTRHLMEKLGIAGLARRLPRDVSVGERQRAAIARA
LAGKPDLVLADEPTASLDSAQAEATMALLTALARETGVALLMVTHDRALVERHGFRMAICQSADNGQSDLLSDPAAEGVP
>Mature_240_residues
MDRVVLLDGVVAGKGERFRVRMSGFRVGAGETVAIVGKSGSGKSTILDTIAGILRPIEVRAFRLMSGAASVDMGKLWAAD
DQRALRAARARHIGYVLQTGGLAPFLSIEQNIALPLWRDGGQDPGWTRHLMEKLGIAGLARRLPRDVSVGERQRAAIARA
LAGKPDLVLADEPTASLDSAQAEATMALLTALARETGVALLMVTHDRALVERHGFRMAICQSADNGQSDLLSDPAAEGVP

Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI11967969, Length=195, Percent_Identity=31.7948717948718, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI46592915, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592898, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592956, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592978, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI46592971, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592964, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=207, Percent_Identity=39.6135265700483, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=39.4871794871795, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789873, Length=201, Percent_Identity=34.8258706467662, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786398, Length=213, Percent_Identity=31.924882629108, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788225, Length=189, Percent_Identity=34.3915343915344, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787105, Length=183, Percent_Identity=38.2513661202186, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788506, Length=225, Percent_Identity=32.8888888888889, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=31.5217391304348, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=32.1266968325792, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789672, Length=209, Percent_Identity=31.1004784688995, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786253, Length=180, Percent_Identity=33.8888888888889, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI145693107, Length=214, Percent_Identity=35.981308411215, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786872, Length=210, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081791, Length=184, Percent_Identity=33.1521739130435, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=32.5966850828729, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=29.4685990338164, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=31.7307692307692, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787758, Length=202, Percent_Identity=29.7029702970297, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI87082267, Length=185, Percent_Identity=34.5945945945946, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=31.1965811965812, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI48994883, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787500, Length=199, Percent_Identity=32.6633165829146, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=29.5154185022026, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788450, Length=189, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081709, Length=185, Percent_Identity=27.5675675675676, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789962, Length=194, Percent_Identity=31.4432989690722, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=32.1782178217822, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787547, Length=227, Percent_Identity=26.8722466960352, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=29.5238095238095, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789963, Length=206, Percent_Identity=31.5533980582524, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786698, Length=191, Percent_Identity=28.7958115183246, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788897, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787759, Length=207, Percent_Identity=29.4685990338164, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788053, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=225, Percent_Identity=34.2222222222222, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994943, Length=192, Percent_Identity=26.0416666666667, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787548, Length=205, Percent_Identity=31.219512195122, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786803, Length=188, Percent_Identity=32.4468085106383, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=186, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789593, Length=202, Percent_Identity=31.6831683168317, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786345, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790534, Length=194, Percent_Identity=29.8969072164948, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789586, Length=198, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786981, Length=202, Percent_Identity=30.6930693069307, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=214, Percent_Identity=26.6355140186916, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015854
- InterPro:   IPR003593
- InterPro:   IPR011924 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25467; Mature: 25467

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVVLLDGVVAGKGERFRVRMSGFRVGAGETVAIVGKSGSGKSTILDTIAGILRPIEVR
CCCEEEECCEEECCCCEEEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHH
AFRLMSGAASVDMGKLWAADDQRALRAARARHIGYVLQTGGLAPFLSIEQNIALPLWRDG
HHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCEEECCC
GQDPGWTRHLMEKLGIAGLARRLPRDVSVGERQRAAIARALAGKPDLVLADEPTASLDSA
CCCCCHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
QAEATMALLTALARETGVALLMVTHDRALVERHGFRMAICQSADNGQSDLLSDPAAEGVP
HHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MDRVVLLDGVVAGKGERFRVRMSGFRVGAGETVAIVGKSGSGKSTILDTIAGILRPIEVR
CCCEEEECCEEECCCCEEEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHH
AFRLMSGAASVDMGKLWAADDQRALRAARARHIGYVLQTGGLAPFLSIEQNIALPLWRDG
HHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHEEEECCCCCCEEECCCCCCCEEECCC
GQDPGWTRHLMEKLGIAGLARRLPRDVSVGERQRAAIARALAGKPDLVLADEPTASLDSA
CCCCCHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHH
QAEATMALLTALARETGVALLMVTHDRALVERHGFRMAICQSADNGQSDLLSDPAAEGVP
HHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA