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The map label for this gene is nodB [H]

Identifier: 83594444

GI number: 83594444

Start: 3591344

End: 3592261

Strand: Reverse

Name: nodB [H]

Synonym: Rru_A3114

Alternate gene names: 83594444

Gene position: 3592261-3591344 (Counterclockwise)

Preceding gene: 83594445

Following gene: 83594443

Centisome position: 82.53

GC content: 67.65

Gene sequence:

>918_bases
GTGGTCGCCCCGCCCCTGCGCCGCGACGGACGCATCGTCAATGCCATGAGCGTCGATGTCGAAGAGCATTTCCAGGTCCA
GGCCCTGGCTGGGCGGGTATCGCGCGATCAGTGGGATGGTCTGGAAAGCCGGGTGGAGGCCAATACCGGGCGCGTCCTTG
ATCTTTTCGCCCGTCACGGGGTGACGGCCACCTTCTTCACCCTGGGCTGGATCGCCGAGCGCCATCCGGGGCTGATCCGC
CGCATCGTCGCCGAGGGGCACGAACTGGCCTCCCACGGCTGGGCCCACCATCTGGTGACCAGCCAGACGCCCGAGCAGTT
CCGCGCCGATGTGCGCCAGACCAAGGCCCTGCTTGAGGATATCGGCGGCGTCGCGGTGCGCGGCTATCGGGCGGCGACCT
TTTCGGTCTGTCCCTCGACCCTATGGGCGCTGGGGATCCTCGAGGAGGAAGGCTACGCCTATAGCTCGAGCATCTTCCCG
GTCCACCATGATCTTTATGGGATGCCCGACGCGCCGCGCTTCGCCTTCCACCCCCTGCCCGGCCGCGCCTTCATCGAATA
TCCGATGACGACCCTGCGGCTGGCCGGGCGCAATCTGCCCTGCGGCGGCGGCGGTTATTTCCGGCTGTTGCCGCTGGCCC
TGTTCCGCGCCGCCCTGTCGCGCATTCAGGCGAGCGAATCCCAGCCGGGAATCTTCTATTTCCACCCCTGGGAGATCGAC
CCCGACCAGCCGCGCTTCGATGGATTGCCGCTGAAGTCGCGCTTCCGCCATTACGTCAATCTCGATCGGATGGCCGGCAA
GCTCGATCGTCTGCTGGGCGCTTTCGCCTGGGACCGCCTTGACCGGGTGTTCGGCGTGGCGCCCCAAGGCGATCCCCCGG
CGCCGCGCCGCCCTTCGGCCGATCGCGCCGTGTCATGA

Upstream 100 bases:

>100_bases
TTTTTCCGATTTCGTCTCTGAACTGAACGCTGTCTGGAAAGGCCGGCCCTGATGGATGTTCTAGTCTCCCCCCCCCGCGC
CGTCCCCGGCGTTCGAGCCG

Downstream 100 bases:

>100_bases
TCATTCGCCAACTGACCCCCGCGGCCTCCGCCGCCTGGGACCTCTTTGTCGAAAGCTGCCCGCAGGGAACCTTCTTTCAC
CGCGCCGGCTGGCAGCGGGT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MVAPPLRRDGRIVNAMSVDVEEHFQVQALAGRVSRDQWDGLESRVEANTGRVLDLFARHGVTATFFTLGWIAERHPGLIR
RIVAEGHELASHGWAHHLVTSQTPEQFRADVRQTKALLEDIGGVAVRGYRAATFSVCPSTLWALGILEEEGYAYSSSIFP
VHHDLYGMPDAPRFAFHPLPGRAFIEYPMTTLRLAGRNLPCGGGGYFRLLPLALFRAALSRIQASESQPGIFYFHPWEID
PDQPRFDGLPLKSRFRHYVNLDRMAGKLDRLLGAFAWDRLDRVFGVAPQGDPPAPRRPSADRAVS

Sequences:

>Translated_305_residues
MVAPPLRRDGRIVNAMSVDVEEHFQVQALAGRVSRDQWDGLESRVEANTGRVLDLFARHGVTATFFTLGWIAERHPGLIR
RIVAEGHELASHGWAHHLVTSQTPEQFRADVRQTKALLEDIGGVAVRGYRAATFSVCPSTLWALGILEEEGYAYSSSIFP
VHHDLYGMPDAPRFAFHPLPGRAFIEYPMTTLRLAGRNLPCGGGGYFRLLPLALFRAALSRIQASESQPGIFYFHPWEID
PDQPRFDGLPLKSRFRHYVNLDRMAGKLDRLLGAFAWDRLDRVFGVAPQGDPPAPRRPSADRAVS
>Mature_305_residues
MVAPPLRRDGRIVNAMSVDVEEHFQVQALAGRVSRDQWDGLESRVEANTGRVLDLFARHGVTATFFTLGWIAERHPGLIR
RIVAEGHELASHGWAHHLVTSQTPEQFRADVRQTKALLEDIGGVAVRGYRAATFSVCPSTLWALGILEEEGYAYSSSIFP
VHHDLYGMPDAPRFAFHPLPGRAFIEYPMTTLRLAGRNLPCGGGGYFRLLPLALFRAALSRIQASESQPGIFYFHPWEID
PDQPRFDGLPLKSRFRHYVNLDRMAGKLDRLLGAFAWDRLDRVFGVAPQGDPPAPRRPSADRAVS

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 34087; Mature: 34087

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAPPLRRDGRIVNAMSVDVEEHFQVQALAGRVSRDQWDGLESRVEANTGRVLDLFARHG
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHCC
VTATFFTLGWIAERHPGLIRRIVAEGHELASHGWAHHLVTSQTPEQFRADVRQTKALLED
CHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHH
IGGVAVRGYRAATFSVCPSTLWALGILEEEGYAYSSSIFPVHHDLYGMPDAPRFAFHPLP
CCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEHHHHCCCCCCCCCEECCCC
GRAFIEYPMTTLRLAGRNLPCGGGGYFRLLPLALFRAALSRIQASESQPGIFYFHPWEID
CCEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
PDQPRFDGLPLKSRFRHYVNLDRMAGKLDRLLGAFAWDRLDRVFGVAPQGDPPAPRRPSA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DRAVS
CCCCC
>Mature Secondary Structure
MVAPPLRRDGRIVNAMSVDVEEHFQVQALAGRVSRDQWDGLESRVEANTGRVLDLFARHG
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHCC
VTATFFTLGWIAERHPGLIRRIVAEGHELASHGWAHHLVTSQTPEQFRADVRQTKALLED
CHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHH
IGGVAVRGYRAATFSVCPSTLWALGILEEEGYAYSSSIFPVHHDLYGMPDAPRFAFHPLP
CCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEHHHHCCCCCCCCCEECCCC
GRAFIEYPMTTLRLAGRNLPCGGGGYFRLLPLALFRAALSRIQASESQPGIFYFHPWEID
CCEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
PDQPRFDGLPLKSRFRHYVNLDRMAGKLDRLLGAFAWDRLDRVFGVAPQGDPPAPRRPSA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DRAVS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10474187 [H]