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The map label for this gene is ychK [C]

Identifier: 83594440

GI number: 83594440

Start: 3585662

End: 3587908

Strand: Reverse

Name: ychK [C]

Synonym: Rru_A3110

Alternate gene names: 83594440

Gene position: 3587908-3585662 (Counterclockwise)

Preceding gene: 83594441

Following gene: 83594436

Centisome position: 82.43

GC content: 69.6

Gene sequence:

>2247_bases
ATGGGTGTTTCCCCTTTTCCGGGCGCGCTGTGGCCGACTTTGCGCCCGCGCTCGCCGGCCTTTCTCGCCCGTCTGGGCGA
TCTGGCGCCCCTGCAGACGCCCGCGGCCGGCGACCAGCCGTTGTTCCGCCGCGGTGATCTGATCGAAGGGCTGTGGTTGA
TCGAGGCCGGCGCCCTGCTGATCGGCGAGGGCGCCGGCGAGGGCGCGGGCGCGGGCGCGGGCGACATCCCCGCCGGCTCG
ATGGTCGGGGCGCTTCAGGGCGATCCCCCCCACCGCTATCCCTGCGAGGCCCGGCCGGGGGCGGGCTGCCGTTTGCGCTT
CCTGTCCTTGGCCGACGCCGCGATCCTCGCCGCGCTCTGGCCCGCCGACGGGGCCGGGCTGGCGGCGGATGTCGAGCGCG
CCATGGCCCGCCTGTCGCTGCTGATCGCCTTTGGCGACAGCATCGTCTATCGCGGCCTGCCCACGCCGCTGCGCGTGCTG
TTGGCCGAAAGCGCCGAAATCGTCCACCTGCGGGCCGGCGAACGTCTGGTCAGCGCCGGCGAGCGGCTTTCGGCGATGGT
CATCGTCGTCAGCGGCCGCCTGCGCACCCAGCGCAACGACCCGCGCTATGATGGGGGGGATGCGCGGGGCAGGGGATTGA
AGAACCGCACCCAGGAATTCGGACCCGGTCAAAGCCTGGGGGAACGGGCGACCATTCTGGCCGAACCCCAGGCCGAGGAG
GTGGTGGCGACCCGCGACACCGTTTTGGCCAAGGTGCCCGAGGCGGCCTTCCTTAACGCCCTTCACCGCTTTCCCGAAGA
TATCCTGCGCTGCACCCTTGGGGTGGCGGAGCAAAACTTCGGCAAGGCGGCCCGTGGGCGTCGGCAATCGGGGGGAACGC
TGCCCTCGCTGGCCCTGGTCGCCGCCGATGGCTCGGTCGATCTCGCCTTCGCCGCCCGCGCCCTTGGCACGGCGCTTGAG
CGCCGGGGCAGCCTGCGCATCATGACCCGCGACGACGTGATCGCCGCCGGCTTCGGTCCGGCGGTGCGCGATTATCCCCA
GGTCATTCCCGCCGTCGGCCTGCTCGACTGGATCAGCGATCAGGAACGCCAGCATTCCTGCGTGGTCTATGTGGCCGGAG
CGCCCACGGAGTCGTGGACGCGGCTTTGCGTCGCCCAGGCCGACCGCATCGTCGTTGTCGCCACCAACCGCTCGGGGTCT
CCGGAACCGATCAAGGCCCTGCTCGCCCCCTTTTCCGAGGGCGCCGAGCGCGAGGTGACCCTTGCCCTGCTCCGCCCCCC
CGGTCAGCGCGGTTGGCCCGGGGCCGAGGGCTGGCTGGGCGCCCTGGGCGTCGAGTCCTTCCAGCCGATGACCGAGGGCG
ATCCCCGCGACTGGCATCGCATGGCCCGCTTCCTGACCGGGCGGGCGGTGGGCGTGGTGCTAAGCGGCGGCGGGGCGCGC
GGCTTTGCCCATATCGGCGTGTTGCGCGCCCTGGAAGAGGCGGGGGTGCCGGTCGATGTGGTCGGCGGCACCAGCATCGG
CGCCCTGGTCGCCGCCCTTTATGCCAAGGGGATGGGGCTTGACCGAATCACCGACGCGATCATGGCCATGGTCAAGCGCA
GCGAGCAGATCACCTTGCCGATGGTGGCGCTGACCTCGGGGCGGCGCTTCACCCAGGGCCTGCGCGAGTTGTTCTCCGAC
TTGCTGATCCGCGACCTGGACCGCACCTTTTTTTCGGTGTCGTGCAATCTCACCACCGCCGAAACCAAGGTCCATCGCGA
CGGACCGGTGTGGCAGGCGGTGCTGGCCAGCAATTCGCCGCCCGGGCTGTTTCCGCCGGTGGTCATCGACAACGAGCTTT
ACGTGGATGGCGGCCTGCTCAACGGCCTGCCCATCGACGTGATGATGCAGCTGAACGAGGGTGGCCGGCTGATCGTGTCC
GATGTCAACGCCAATGCCACGATGGCGGCGGCCGAATGCCACGAAGACGGCCTGTCGGGCTGGGAGGTGGCTTGGCGCAA
AGCCAACCCCTTCCTTGATCCCGTCGCCATGCCCGGCATCCGCGAAATCATCGGCCGCTCGATGGCCATCGGCAGCCTCG
CCCAGCGCAAAAAGGTGCTGCGCCGGAAAACCGACCTGAAACTCTGCCCGCCGGTCGGCGGCTTCCCGATGCATGGCCAC
AAGAAAGGCGTCCAGATCAGCGATATCGGCTACATCTCCACCCGCAACGACATCGTCGACTGGTGGGCCCGCCAGACGAT
CACCTAA

Upstream 100 bases:

>100_bases
GATACCGGCGCCTGGACGAGGGGGATGCTTACCTGCGTCGTTCTGGAAGGCTCGGAACGGCGTTTCCTCAGCGTGAAAGA
CGACTGAGAGGAGTGGAATT

Downstream 100 bases:

>100_bases
GGACTCCCCCCATCCCTTCCCATCACACCGGCAAGGCCCGGGGGGGCAGGGGTGGGGGAGGGGGGGGAAGGGAGGTTGCG
GCGTTGAGGCGGGCGACCGC

Product: cyclic nucleotide-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 747

Protein sequence:

>748_residues
MGVSPFPGALWPTLRPRSPAFLARLGDLAPLQTPAAGDQPLFRRGDLIEGLWLIEAGALLIGEGAGEGAGAGAGDIPAGS
MVGALQGDPPHRYPCEARPGAGCRLRFLSLADAAILAALWPADGAGLAADVERAMARLSLLIAFGDSIVYRGLPTPLRVL
LAESAEIVHLRAGERLVSAGERLSAMVIVVSGRLRTQRNDPRYDGGDARGRGLKNRTQEFGPGQSLGERATILAEPQAEE
VVATRDTVLAKVPEAAFLNALHRFPEDILRCTLGVAEQNFGKAARGRRQSGGTLPSLALVAADGSVDLAFAARALGTALE
RRGSLRIMTRDDVIAAGFGPAVRDYPQVIPAVGLLDWISDQERQHSCVVYVAGAPTESWTRLCVAQADRIVVVATNRSGS
PEPIKALLAPFSEGAEREVTLALLRPPGQRGWPGAEGWLGALGVESFQPMTEGDPRDWHRMARFLTGRAVGVVLSGGGAR
GFAHIGVLRALEEAGVPVDVVGGTSIGALVAALYAKGMGLDRITDAIMAMVKRSEQITLPMVALTSGRRFTQGLRELFSD
LLIRDLDRTFFSVSCNLTTAETKVHRDGPVWQAVLASNSPPGLFPPVVIDNELYVDGGLLNGLPIDVMMQLNEGGRLIVS
DVNANATMAAAECHEDGLSGWEVAWRKANPFLDPVAMPGIREIIGRSMAIGSLAQRKKVLRRKTDLKLCPPVGGFPMHGH
KKGVQISDIGYISTRNDIVDWWARQTIT

Sequences:

>Translated_748_residues
MGVSPFPGALWPTLRPRSPAFLARLGDLAPLQTPAAGDQPLFRRGDLIEGLWLIEAGALLIGEGAGEGAGAGAGDIPAGS
MVGALQGDPPHRYPCEARPGAGCRLRFLSLADAAILAALWPADGAGLAADVERAMARLSLLIAFGDSIVYRGLPTPLRVL
LAESAEIVHLRAGERLVSAGERLSAMVIVVSGRLRTQRNDPRYDGGDARGRGLKNRTQEFGPGQSLGERATILAEPQAEE
VVATRDTVLAKVPEAAFLNALHRFPEDILRCTLGVAEQNFGKAARGRRQSGGTLPSLALVAADGSVDLAFAARALGTALE
RRGSLRIMTRDDVIAAGFGPAVRDYPQVIPAVGLLDWISDQERQHSCVVYVAGAPTESWTRLCVAQADRIVVVATNRSGS
PEPIKALLAPFSEGAEREVTLALLRPPGQRGWPGAEGWLGALGVESFQPMTEGDPRDWHRMARFLTGRAVGVVLSGGGAR
GFAHIGVLRALEEAGVPVDVVGGTSIGALVAALYAKGMGLDRITDAIMAMVKRSEQITLPMVALTSGRRFTQGLRELFSD
LLIRDLDRTFFSVSCNLTTAETKVHRDGPVWQAVLASNSPPGLFPPVVIDNELYVDGGLLNGLPIDVMMQLNEGGRLIVS
DVNANATMAAAECHEDGLSGWEVAWRKANPFLDPVAMPGIREIIGRSMAIGSLAQRKKVLRRKTDLKLCPPVGGFPMHGH
KKGVQISDIGYISTRNDIVDWWARQTIT
>Mature_747_residues
GVSPFPGALWPTLRPRSPAFLARLGDLAPLQTPAAGDQPLFRRGDLIEGLWLIEAGALLIGEGAGEGAGAGAGDIPAGSM
VGALQGDPPHRYPCEARPGAGCRLRFLSLADAAILAALWPADGAGLAADVERAMARLSLLIAFGDSIVYRGLPTPLRVLL
AESAEIVHLRAGERLVSAGERLSAMVIVVSGRLRTQRNDPRYDGGDARGRGLKNRTQEFGPGQSLGERATILAEPQAEEV
VATRDTVLAKVPEAAFLNALHRFPEDILRCTLGVAEQNFGKAARGRRQSGGTLPSLALVAADGSVDLAFAARALGTALER
RGSLRIMTRDDVIAAGFGPAVRDYPQVIPAVGLLDWISDQERQHSCVVYVAGAPTESWTRLCVAQADRIVVVATNRSGSP
EPIKALLAPFSEGAEREVTLALLRPPGQRGWPGAEGWLGALGVESFQPMTEGDPRDWHRMARFLTGRAVGVVLSGGGARG
FAHIGVLRALEEAGVPVDVVGGTSIGALVAALYAKGMGLDRITDAIMAMVKRSEQITLPMVALTSGRRFTQGLRELFSDL
LIRDLDRTFFSVSCNLTTAETKVHRDGPVWQAVLASNSPPGLFPPVVIDNELYVDGGLLNGLPIDVMMQLNEGGRLIVSD
VNANATMAAAECHEDGLSGWEVAWRKANPFLDPVAMPGIREIIGRSMAIGSLAQRKKVLRRKTDLKLCPPVGGFPMHGHK
KGVQISDIGYISTRNDIVDWWARQTIT

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=616, Percent_Identity=29.3831168831169, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI260656039, Length=616, Percent_Identity=29.3831168831169, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI260656041, Length=620, Percent_Identity=29.6774193548387, Blast_Score=233, Evalue=5e-61,
Organism=Homo sapiens, GI116256487, Length=620, Percent_Identity=29.6774193548387, Blast_Score=233, Evalue=5e-61,
Organism=Homo sapiens, GI260656037, Length=620, Percent_Identity=29.6774193548387, Blast_Score=233, Evalue=5e-61,
Organism=Homo sapiens, GI148727335, Length=632, Percent_Identity=29.4303797468354, Blast_Score=222, Evalue=9e-58,
Organism=Homo sapiens, GI148727290, Length=632, Percent_Identity=29.2721518987342, Blast_Score=222, Evalue=1e-57,
Organism=Escherichia coli, GI226510936, Length=166, Percent_Identity=34.3373493975904, Blast_Score=89, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI71997299, Length=632, Percent_Identity=28.3227848101266, Blast_Score=176, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI71997289, Length=632, Percent_Identity=28.3227848101266, Blast_Score=176, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI193204778, Length=629, Percent_Identity=26.2321144674086, Blast_Score=167, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6323581, Length=283, Percent_Identity=32.8621908127208, Blast_Score=148, Evalue=4e-36,
Organism=Drosophila melanogaster, GI28571388, Length=647, Percent_Identity=27.047913446677, Blast_Score=202, Evalue=6e-52,
Organism=Drosophila melanogaster, GI281376913, Length=647, Percent_Identity=26.8933539412674, Blast_Score=199, Evalue=5e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001423
- InterPro:   IPR002641
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00027 cNMP_binding; PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 79578; Mature: 79446

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSPFPGALWPTLRPRSPAFLARLGDLAPLQTPAAGDQPLFRRGDLIEGLWLIEAGALL
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCEEECCEEE
IGEGAGEGAGAGAGDIPAGSMVGALQGDPPHRYPCEARPGAGCRLRFLSLADAAILAALW
EECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCC
PADGAGLAADVERAMARLSLLIAFGDSIVYRGLPTPLRVLLAESAEIVHLRAGERLVSAG
CCCCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHCCCCEEEEECCCHHHHCC
ERLSAMVIVVSGRLRTQRNDPRYDGGDARGRGLKNRTQEFGPGQSLGERATILAEPQAEE
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHH
VVATRDTVLAKVPEAAFLNALHRFPEDILRCTLGVAEQNFGKAARGRRQSGGTLPSLALV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEE
AADGSVDLAFAARALGTALERRGSLRIMTRDDVIAAGFGPAVRDYPQVIPAVGLLDWISD
EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
QERQHSCVVYVAGAPTESWTRLCVAQADRIVVVATNRSGSPEPIKALLAPFSEGAEREVT
CCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEE
LALLRPPGQRGWPGAEGWLGALGVESFQPMTEGDPRDWHRMARFLTGRAVGVVLSGGGAR
EEEECCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC
GFAHIGVLRALEEAGVPVDVVGGTSIGALVAALYAKGMGLDRITDAIMAMVKRSEQITLP
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEE
MVALTSGRRFTQGLRELFSDLLIRDLDRTFFSVSCNLTTAETKVHRDGPVWQAVLASNSP
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEHHCEECCCCCHHHHHHHCCCC
PGLFPPVVIDNELYVDGGLLNGLPIDVMMQLNEGGRLIVSDVNANATMAAAECHEDGLSG
CCCCCCEEECCEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEHHHHHHCCCCC
WEVAWRKANPFLDPVAMPGIREIIGRSMAIGSLAQRKKVLRRKTDLKLCPPVGGFPMHGH
HHHEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
KKGVQISDIGYISTRNDIVDWWARQTIT
CCCCEEECCEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GVSPFPGALWPTLRPRSPAFLARLGDLAPLQTPAAGDQPLFRRGDLIEGLWLIEAGALL
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCEEECCEEE
IGEGAGEGAGAGAGDIPAGSMVGALQGDPPHRYPCEARPGAGCRLRFLSLADAAILAALW
EECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCC
PADGAGLAADVERAMARLSLLIAFGDSIVYRGLPTPLRVLLAESAEIVHLRAGERLVSAG
CCCCCCHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHCCCCEEEEECCCHHHHCC
ERLSAMVIVVSGRLRTQRNDPRYDGGDARGRGLKNRTQEFGPGQSLGERATILAEPQAEE
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCHHH
VVATRDTVLAKVPEAAFLNALHRFPEDILRCTLGVAEQNFGKAARGRRQSGGTLPSLALV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEE
AADGSVDLAFAARALGTALERRGSLRIMTRDDVIAAGFGPAVRDYPQVIPAVGLLDWISD
EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
QERQHSCVVYVAGAPTESWTRLCVAQADRIVVVATNRSGSPEPIKALLAPFSEGAEREVT
CCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEE
LALLRPPGQRGWPGAEGWLGALGVESFQPMTEGDPRDWHRMARFLTGRAVGVVLSGGGAR
EEEECCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC
GFAHIGVLRALEEAGVPVDVVGGTSIGALVAALYAKGMGLDRITDAIMAMVKRSEQITLP
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEE
MVALTSGRRFTQGLRELFSDLLIRDLDRTFFSVSCNLTTAETKVHRDGPVWQAVLASNSP
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEHHCEECCCCCHHHHHHHCCCC
PGLFPPVVIDNELYVDGGLLNGLPIDVMMQLNEGGRLIVSDVNANATMAAAECHEDGLSG
CCCCCCEEECCEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEHHHHHHCCCCC
WEVAWRKANPFLDPVAMPGIREIIGRSMAIGSLAQRKKVLRRKTDLKLCPPVGGFPMHGH
HHHEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
KKGVQISDIGYISTRNDIVDWWARQTIT
CCCCEEECCEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]