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The map label for this gene is ybiO [H]

Identifier: 83594402

GI number: 83594402

Start: 3536238

End: 3538559

Strand: Direct

Name: ybiO [H]

Synonym: Rru_A3072

Alternate gene names: 83594402

Gene position: 3536238-3538559 (Clockwise)

Preceding gene: 83594401

Following gene: 83594406

Centisome position: 81.24

GC content: 66.54

Gene sequence:

>2322_bases
ATGCCCCCCCCTTATCCCCGCTCCGGCCCGCTTTGGCCTGTTCTTGGCTTTTTCCTGCTCATCGCCGATCCGGCTTCCGC
GCAGCCGGCCGCCTTCCCCTCCCTGTCCTCGGCCCCGACCTCCGAAGCCGCTCCGCCGCCGGCCCTGGCGGCCGAGGATG
TGGAAACCCTGGGGCGGGTGCTTGATAATCCCCAGGCCCGCGCCGCCCTGCTTGACGCCCTGCGCCGCTCGGCCGATCCG
GCGACCGCCGGGGCCGGAGACACGCCGGCCGCCGCGCCCGCCGATCCCACGGTTATCTCCGATGTCGCCAACCACCTGAC
CGCGACCTGGACCTCGCTGCTTTCGGGCCTGCGGGTTTTCGAGAGCGTTCCGCAGATCCGGGCGTGGCTTGGCCAACAAA
CGGCCAGCGGGCAAAAAGCCGCGTGGCTGACCTTCCTGTGGCAAGCCACCCTGGCGCTCGGCGCCGGTATCGCCACGGGC
TGGCTGATCCATATGCTGATCGAGCGGCCGAAACGCCGGATCGATCTGGCGGCGGAAGGCTTGCCACCGGTCGGGCGCTG
GCTGCTGATTCCGCTGCGGCTGCTGTTGACCATGCTGCCGGTCGCCGCCCTGGCCATCGGCGTCAATCTGGCGCTGCCGC
TGATCGAGGCGACGCTGCCGGTGCGTCTGGTCGCTGGCCTCGCCATCAATACCTTTGTCGCCGCCCGCCTTGTTCATCAC
ACGGCGGCGATCGTGCTGACCCCGCCGACTCCGGCCCTGGCCCTGGTCCGCTTCACCCCGGAAAGCGGCGCCTATCTGTA
TATCTGGATCCGGCGGATGACCAATCTCGCCGCGCTGGGGGTTTTTGTCGTCGGAACGCTGGAGGTTCTCGGCCTGCCGG
TCGGCACCCGCGAATTGACCGCCAAGCTGTTCGGCCTAGTCATGCTGGGTCTGGCCGTCGTGCTGATCTTGCAAAGCCGC
AAAACCGTCGCCTCGACGATCCGCCTGCGCATCCTCGGCCTGGGCAAGGGCAGCCGCACCGCCAAGGCCCTGGGGCGCTT
GGCCGAGGTCTGGCACGTGCTGGCCCTGGTCTATGTCTGCGCGCTGTTCCTGACTTGGTTCCTTGATATCCCCGGCGGCT
TCCGTTTCGCCACCCTGGCCACCGTTGAGACCCTGCTCGCCATAGCCGGAGCCGGACTGGCGATGCGGCTATCGGCAAAC
CTGCTTGAGCGGTTGTTCGCGATCTCGGAAGATCTCCAGAAGCGCCATCCCGGCCTCACTCTGCGGGCCAACCGCTATCT
TTCCGGCCTGAAGACGGTGGTGAAAGGGATCATCACCCTGGTCGCCCTGGTTCTGGTGCTCCAGGCCTGGGGCGCCAACA
GCATCGCCTGGGTCACCGGCCCGGGGGCGCGGCTGATCGGCGCCGTCAGCTCGATCGGCTTCATCCTGCTCGCCGGACTG
GTCGCCTGGGAGGTGGTGATCAACGCCACCGAACGCTACCTGAGCAACATCGACGCCCATGGTCAGACCATCCAGCGCAG
CCAGCGCGTGCGTACGCTGATCCCCCTCGCCCGCACGGTGATCATGATTTTCCTGGTGGTGGTGGTGACGCTGATCGTGC
TGTCGGAACTGGGCATGAACATCGGGCCGCTGCTGGCCGGTGCCGGCGTGCTCGGCCTCGCCATCAGCTTCGGTGCCCAG
AAGCTGGTGCAAGATGTCATCACCGGCGCCTTCTGCCTGATCGACGACGCCATTTCCGTGGGCGACGTGGTTCAGGTCGC
CGGACATAGCGGCGTGGTGGAACGGCTGTCGATCCGCTCGCTGCGCCTGCGCGACGAAAGCGGCAGCGTCCATACCATTC
CCTTCAGCAGCGTCGACACCGTGACCAATCTGACCAAGGATTTCAGCTTCTACGTGATGACCATCGGCGTAGCCTATCGC
GAGGACACCGATGCCGTCTGCGCCCTGCTGACCAAGGTCGACGAAGCCTTGCGGGCCAAGCCCGAGTATGCCGCCGAGAT
CCTCGCGCCGCTGGAAATTCTGGGCGTCGACAGCTTCGGCGCCTCGTCGGTCAACATCAAGGCGCGGATCAAGACGCGGC
CGATCAAACAGTGGTTCGTCGGCCGCGAATTCAACCGCATGATGAAACAGGCCTTCGATGCCGCCGGCATCGAGATCCCG
TTCCCCCATACCACCGTTTATTTCGGCACCGACCGTCAGGGCGCCGCACCGCCCGTTCACCTGAGGATCGAGGGTGGCCC
CGGCGGCGACCGCCAGGACGACGGGATCTCGCTCGACAAACTCAGGCCGGCCGACGCTCGACAATCCAGCGATAGGCAAT
GA

Upstream 100 bases:

>100_bases
GCCGGGGGCGTCGGCGACCGTACCGCGATGCAACCCTTTCGCCGGGACGGGTGTTGCCCCGGGGTAGCCTGTTCGCCGCC
CCGACCCAGGAAGCCCGCCC

Downstream 100 bases:

>100_bases
GATTGATGGCGATGACGAAGACCCCGGAAAACACCGTGTCCGACAGGAAATGGCCGCCGACGGCGATGCGCGACAGACCA
ACCGCGCTGCCGAAGGCCAG

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 773; Mature: 772

Protein sequence:

>773_residues
MPPPYPRSGPLWPVLGFFLLIADPASAQPAAFPSLSSAPTSEAAPPPALAAEDVETLGRVLDNPQARAALLDALRRSADP
ATAGAGDTPAAAPADPTVISDVANHLTATWTSLLSGLRVFESVPQIRAWLGQQTASGQKAAWLTFLWQATLALGAGIATG
WLIHMLIERPKRRIDLAAEGLPPVGRWLLIPLRLLLTMLPVAALAIGVNLALPLIEATLPVRLVAGLAINTFVAARLVHH
TAAIVLTPPTPALALVRFTPESGAYLYIWIRRMTNLAALGVFVVGTLEVLGLPVGTRELTAKLFGLVMLGLAVVLILQSR
KTVASTIRLRILGLGKGSRTAKALGRLAEVWHVLALVYVCALFLTWFLDIPGGFRFATLATVETLLAIAGAGLAMRLSAN
LLERLFAISEDLQKRHPGLTLRANRYLSGLKTVVKGIITLVALVLVLQAWGANSIAWVTGPGARLIGAVSSIGFILLAGL
VAWEVVINATERYLSNIDAHGQTIQRSQRVRTLIPLARTVIMIFLVVVVTLIVLSELGMNIGPLLAGAGVLGLAISFGAQ
KLVQDVITGAFCLIDDAISVGDVVQVAGHSGVVERLSIRSLRLRDESGSVHTIPFSSVDTVTNLTKDFSFYVMTIGVAYR
EDTDAVCALLTKVDEALRAKPEYAAEILAPLEILGVDSFGASSVNIKARIKTRPIKQWFVGREFNRMMKQAFDAAGIEIP
FPHTTVYFGTDRQGAAPPVHLRIEGGPGGDRQDDGISLDKLRPADARQSSDRQ

Sequences:

>Translated_773_residues
MPPPYPRSGPLWPVLGFFLLIADPASAQPAAFPSLSSAPTSEAAPPPALAAEDVETLGRVLDNPQARAALLDALRRSADP
ATAGAGDTPAAAPADPTVISDVANHLTATWTSLLSGLRVFESVPQIRAWLGQQTASGQKAAWLTFLWQATLALGAGIATG
WLIHMLIERPKRRIDLAAEGLPPVGRWLLIPLRLLLTMLPVAALAIGVNLALPLIEATLPVRLVAGLAINTFVAARLVHH
TAAIVLTPPTPALALVRFTPESGAYLYIWIRRMTNLAALGVFVVGTLEVLGLPVGTRELTAKLFGLVMLGLAVVLILQSR
KTVASTIRLRILGLGKGSRTAKALGRLAEVWHVLALVYVCALFLTWFLDIPGGFRFATLATVETLLAIAGAGLAMRLSAN
LLERLFAISEDLQKRHPGLTLRANRYLSGLKTVVKGIITLVALVLVLQAWGANSIAWVTGPGARLIGAVSSIGFILLAGL
VAWEVVINATERYLSNIDAHGQTIQRSQRVRTLIPLARTVIMIFLVVVVTLIVLSELGMNIGPLLAGAGVLGLAISFGAQ
KLVQDVITGAFCLIDDAISVGDVVQVAGHSGVVERLSIRSLRLRDESGSVHTIPFSSVDTVTNLTKDFSFYVMTIGVAYR
EDTDAVCALLTKVDEALRAKPEYAAEILAPLEILGVDSFGASSVNIKARIKTRPIKQWFVGREFNRMMKQAFDAAGIEIP
FPHTTVYFGTDRQGAAPPVHLRIEGGPGGDRQDDGISLDKLRPADARQSSDRQ
>Mature_772_residues
PPPYPRSGPLWPVLGFFLLIADPASAQPAAFPSLSSAPTSEAAPPPALAAEDVETLGRVLDNPQARAALLDALRRSADPA
TAGAGDTPAAAPADPTVISDVANHLTATWTSLLSGLRVFESVPQIRAWLGQQTASGQKAAWLTFLWQATLALGAGIATGW
LIHMLIERPKRRIDLAAEGLPPVGRWLLIPLRLLLTMLPVAALAIGVNLALPLIEATLPVRLVAGLAINTFVAARLVHHT
AAIVLTPPTPALALVRFTPESGAYLYIWIRRMTNLAALGVFVVGTLEVLGLPVGTRELTAKLFGLVMLGLAVVLILQSRK
TVASTIRLRILGLGKGSRTAKALGRLAEVWHVLALVYVCALFLTWFLDIPGGFRFATLATVETLLAIAGAGLAMRLSANL
LERLFAISEDLQKRHPGLTLRANRYLSGLKTVVKGIITLVALVLVLQAWGANSIAWVTGPGARLIGAVSSIGFILLAGLV
AWEVVINATERYLSNIDAHGQTIQRSQRVRTLIPLARTVIMIFLVVVVTLIVLSELGMNIGPLLAGAGVLGLAISFGAQK
LVQDVITGAFCLIDDAISVGDVVQVAGHSGVVERLSIRSLRLRDESGSVHTIPFSSVDTVTNLTKDFSFYVMTIGVAYRE
DTDAVCALLTKVDEALRAKPEYAAEILAPLEILGVDSFGASSVNIKARIKTRPIKQWFVGREFNRMMKQAFDAAGIEIPF
PHTTVYFGTDRQGAAPPVHLRIEGGPGGDRQDDGISLDKLRPADARQSSDRQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=741, Percent_Identity=28.0701754385965, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI1786670, Length=323, Percent_Identity=23.2198142414861, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789291, Length=267, Percent_Identity=23.5955056179775, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 82418; Mature: 82287

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00449 ATPASE_A

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPYPRSGPLWPVLGFFLLIADPASAQPAAFPSLSSAPTSEAAPPPALAAEDVETLGRV
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LDNPQARAALLDALRRSADPATAGAGDTPAAAPADPTVISDVANHLTATWTSLLSGLRVF
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ESVPQIRAWLGQQTASGQKAAWLTFLWQATLALGAGIATGWLIHMLIERPKRRIDLAAEG
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHCC
LPPVGRWLLIPLRLLLTMLPVAALAIGVNLALPLIEATLPVRLVAGLAINTFVAARLVHH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAIVLTPPTPALALVRFTPESGAYLYIWIRRMTNLAALGVFVVGTLEVLGLPVGTRELT
CEEEEECCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AKLFGLVMLGLAVVLILQSRKTVASTIRLRILGLGKGSRTAKALGRLAEVWHVLALVYVC
HHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
ALFLTWFLDIPGGFRFATLATVETLLAIAGAGLAMRLSANLLERLFAISEDLQKRHPGLT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LRANRYLSGLKTVVKGIITLVALVLVLQAWGANSIAWVTGPGARLIGAVSSIGFILLAGL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
VAWEVVINATERYLSNIDAHGQTIQRSQRVRTLIPLARTVIMIFLVVVVTLIVLSELGMN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGPLLAGAGVLGLAISFGAQKLVQDVITGAFCLIDDAISVGDVVQVAGHSGVVERLSIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHH
LRLRDESGSVHTIPFSSVDTVTNLTKDFSFYVMTIGVAYREDTDAVCALLTKVDEALRAK
HEEECCCCCEEEECCCCHHHHHHHHHHHEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCC
PEYAAEILAPLEILGVDSFGASSVNIKARIKTRPIKQWFVGREFNRMMKQAFDAAGIEIP
HHHHHHHHCCHHHEECCCCCCCCEEEEEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCC
FPHTTVYFGTDRQGAAPPVHLRIEGGPGGDRQDDGISLDKLRPADARQSSDRQ
CCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PPPYPRSGPLWPVLGFFLLIADPASAQPAAFPSLSSAPTSEAAPPPALAAEDVETLGRV
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LDNPQARAALLDALRRSADPATAGAGDTPAAAPADPTVISDVANHLTATWTSLLSGLRVF
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ESVPQIRAWLGQQTASGQKAAWLTFLWQATLALGAGIATGWLIHMLIERPKRRIDLAAEG
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHCC
LPPVGRWLLIPLRLLLTMLPVAALAIGVNLALPLIEATLPVRLVAGLAINTFVAARLVHH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAIVLTPPTPALALVRFTPESGAYLYIWIRRMTNLAALGVFVVGTLEVLGLPVGTRELT
CEEEEECCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
AKLFGLVMLGLAVVLILQSRKTVASTIRLRILGLGKGSRTAKALGRLAEVWHVLALVYVC
HHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
ALFLTWFLDIPGGFRFATLATVETLLAIAGAGLAMRLSANLLERLFAISEDLQKRHPGLT
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LRANRYLSGLKTVVKGIITLVALVLVLQAWGANSIAWVTGPGARLIGAVSSIGFILLAGL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
VAWEVVINATERYLSNIDAHGQTIQRSQRVRTLIPLARTVIMIFLVVVVTLIVLSELGMN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IGPLLAGAGVLGLAISFGAQKLVQDVITGAFCLIDDAISVGDVVQVAGHSGVVERLSIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHH
LRLRDESGSVHTIPFSSVDTVTNLTKDFSFYVMTIGVAYREDTDAVCALLTKVDEALRAK
HEEECCCCCEEEECCCCHHHHHHHHHHHEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCC
PEYAAEILAPLEILGVDSFGASSVNIKARIKTRPIKQWFVGREFNRMMKQAFDAAGIEIP
HHHHHHHHCCHHHEECCCCCCCCEEEEEEEECCCHHHHHHCHHHHHHHHHHHHHCCCCCC
FPHTTVYFGTDRQGAAPPVHLRIEGGPGGDRQDDGISLDKLRPADARQSSDRQ
CCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]