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The map label for this gene is ydcR [C]

Identifier: 83594371

GI number: 83594371

Start: 3504895

End: 3506298

Strand: Direct

Name: ydcR [C]

Synonym: Rru_A3041

Alternate gene names: 83594371

Gene position: 3504895-3506298 (Clockwise)

Preceding gene: 83594369

Following gene: 83594372

Centisome position: 80.52

GC content: 74.0

Gene sequence:

>1404_bases
ATGGATCCCTCGCCCTGGATGCCCGTTTTGCCCGAGGGCCGCCGTCCCTTGCATCGGGCGATCGCCGAAGTTCTGGAAGC
CGATATCGCCGCCGGGCGGCTGCCGCCGGGCACCCGCCTGCCGCCCCAGCGCGATCTGGCTTGGCGCCTGAAGGTGACCC
TGGCCACCGTCGGCCGCGCCTATGCCCTGGCCCGCGAGCGCGGATTGATCGGCGGCGAGGTCGGGCGCGGCACCTTCGTG
CTGGGTGAAACCACCTCGGCCGGCCTCGCCCCCTGGCCGCCCCAGGCCGGAGCCGGCGAGAACGGCGCCATCGATCTGGC
CAATACCCACCCGGCGCCGGTGGCCGGTCCGGGCGAGGTCGCCGCCTGCGCCCGCGCCCTGGTCGAGGCGGGAACCGGCA
TCTTCGCCTATCAGCCCGACACCGCCGCCCCCGACCACCGCGACGCGGCGGCGCGCTGGCTGACCGCCCAGGGCGTGCCG
GCCGGCGCCGAGTCGGTGCTGCTGTCGACCGGCGCCCTGAACGGGGTTCTGGCGGCGCTGATGGCCCTGGCCCGTCCCGG
CGATACGGTTCTGACCGAGGCCCTGACCTCGCCGGCCTTCAAGGGCATGGCCGCCCTGCTTGGCCTGCGCCTGCGCGCCG
TCGCCAGCGATGGCGAGGGGCTGCGCCCCGAGGCCCTGGAAGCCGCCCTAGAGCGCGATCCCTCGGCCAAACTGCTGCTC
TGCGTGCCCGCCCTGCACAACCCGACCGGGGCGACCCTGTCGGCCGAGCGCCGCCTGTCGCTAACCGCCCTGGCCGAGCG
CTTCGATCTGACGATCATCGAGGATGCGGTCTATGCGCCGCTGATCGAAAACGGCCCCCCCTCGCTCAAGGCGCTGATGC
CCGACAGGGTGACCCATGTCACCAGCCTATCGAAGATCGGCCTGCCGGGCCTGCGCTGCGGCATGGTGGTGCCGCCCACC
CGCCGGCGCGAGGCGGTGTTGGCCGCCCTACGCGTGTCGTGCTGGATGGCGCCGCCGCCGCTGGCCGCCGTCGCCGCGCG
CTGGATGGACGATGGCACGGTGACCCGCCTGATCGCGGCCCAGCGCCTTGCCGTCAGCGAACGCCGCGCCCTCGCCGACC
GCCTGCTTGGCGATCGCCTGACCTGCCGCCCACCGCCGCCCGCTGCCTCGTTCCTGTGGCTGGCCCTGCCGGCGGGCTGG
CGGGGCGACGATTTCGCCCATGCCCTGCATCGGCGCGGCGTGATGGTGACCCCGGGCGAGGCCTTCACCGTCGATACCGC
CCATGCCCCCCAGGCCGTCCGCCTGTGCCTGGGGCCGCCGTCGCTCGAGCGTCTGGAAACCGCCCTGACCGAGGTTCACG
CCCTGCTGGGCGAAAGCCCCGAACGCCTGGGGGTCTTTCTATAA

Upstream 100 bases:

>100_bases
GGGGGACGCCCAAAGGCATTCCCCACGATTGCCCTGGTATTGCCCCGGTGCAATCGGTAGATTGTCACGGTAACAATTTA
GCCGGAAAGCCGCGCCGCCG

Downstream 100 bases:

>100_bases
CAGGGGCGGTCGCGCCGCTGGAAACGCCGCCGTTCCAAACCCCGTCGCCTGCGTTGAAACACGCGGCGGTCATGACCAGT
TCTGATCCATCGTCGGCGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRAYALARERGLIGGEVGRGTFV
LGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEVAACARALVEAGTGIFAYQPDTAAPDHRDAAARWLTAQGVP
AGAESVLLSTGALNGVLAALMALARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLL
CVPALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHVTSLSKIGLPGLRCGMVVPPT
RRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIAAQRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGW
RGDDFAHALHRRGVMVTPGEAFTVDTAHAPQAVRLCLGPPSLERLETALTEVHALLGESPERLGVFL

Sequences:

>Translated_467_residues
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRAYALARERGLIGGEVGRGTFV
LGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEVAACARALVEAGTGIFAYQPDTAAPDHRDAAARWLTAQGVP
AGAESVLLSTGALNGVLAALMALARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLL
CVPALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHVTSLSKIGLPGLRCGMVVPPT
RRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIAAQRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGW
RGDDFAHALHRRGVMVTPGEAFTVDTAHAPQAVRLCLGPPSLERLETALTEVHALLGESPERLGVFL
>Mature_467_residues
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRAYALARERGLIGGEVGRGTFV
LGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEVAACARALVEAGTGIFAYQPDTAAPDHRDAAARWLTAQGVP
AGAESVLLSTGALNGVLAALMALARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLL
CVPALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHVTSLSKIGLPGLRCGMVVPPT
RRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIAAQRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGW
RGDDFAHALHRRGVMVTPGEAFTVDTAHAPQAVRLCLGPPSLERLETALTEVHALLGESPERLGVFL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=327, Percent_Identity=28.4403669724771, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI33469970, Length=327, Percent_Identity=28.4403669724771, Blast_Score=102, Evalue=6e-22,
Organism=Escherichia coli, GI1787710, Length=478, Percent_Identity=27.6150627615063, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790797, Length=464, Percent_Identity=25.6465517241379, Blast_Score=109, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6321236, Length=315, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49034; Mature: 49034

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHH
YALARERGLIGGEVGRGTFVLGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEV
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHH
AACARALVEAGTGIFAYQPDTAAPDHRDAAARWLTAQGVPAGAESVLLSTGALNGVLAAL
HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
MALARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCEEEE
CVPALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHV
EEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHCCHHCCCCCCHHHHCCHHHHHH
TSLSKIGLPGLRCGMVVPPTRRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIAA
HHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
QRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGWRGDDFAHALHRRGVMVTPGE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEECCCC
AFTVDTAHAPQAVRLCLGPPSLERLETALTEVHALLGESPERLGVFL
EEEEECCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRLKVTLATVGRA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHH
YALARERGLIGGEVGRGTFVLGETTSAGLAPWPPQAGAGENGAIDLANTHPAPVAGPGEV
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHH
AACARALVEAGTGIFAYQPDTAAPDHRDAAARWLTAQGVPAGAESVLLSTGALNGVLAAL
HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
MALARPGDTVLTEALTSPAFKGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCEEEE
CVPALHNPTGATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHV
EEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHCCHHCCCCCCHHHHCCHHHHHH
TSLSKIGLPGLRCGMVVPPTRRREAVLAALRVSCWMAPPPLAAVAARWMDDGTVTRLIAA
HHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
QRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGWRGDDFAHALHRRGVMVTPGE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEECCCC
AFTVDTAHAPQAVRLCLGPPSLERLETALTEVHALLGESPERLGVFL
EEEEECCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]