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The map label for this gene is cbiD

Identifier: 83594326

GI number: 83594326

Start: 3448682

End: 3449755

Strand: Reverse

Name: cbiD

Synonym: Rru_A2996

Alternate gene names: 83594326

Gene position: 3449755-3448682 (Counterclockwise)

Preceding gene: 83594327

Following gene: 83594325

Centisome position: 79.25

GC content: 72.35

Gene sequence:

>1074_bases
GTGGATGAGGCGGACGAGGGGCGGAGCCTGCGCAGGGGCTGGACGACGGGGGCCTGCGCCACGGCGGCGCTGAAGGCCGC
CCTGGAAGCCCTGGTCGACCGGCCGTTTCCCGATCCGGTGGCCCTGACCCTGCCGCGCGGCGAACGCCCGGCCTTTGCCC
TGGCGACGCGGGAAACCGGCCCCGGCTGGGCCCGGGCTGGGGTGATCAAGGACGCTGGCGACGATCCCGACGTGACCCAC
GGCGCCCTGATCGAAGCCACCGCCCGCCTTTTGCCCAAGGGAAGCGGTTTGATCTTCCGCGCCGGGTCGGGGGTGGGCAC
GGTGACCAAGCCCGGGCTGCCGCTGGCCGTGGGCGAGCCGGCGATCAACCCGGTGCCGCGCGCCATGATGACCGAGGTGG
CCACCGCCGCCGGTCTGGCCGATCTCGAGATTTCCATCGCCGTCGCCCAAGGGGCGTCGATCGCCCTGCGCACCTGGAAC
CCGCGCTTAGGGATTCTGGGCGGGCTGTCGATCCTTGGCACCACCGGGGTCGTCGTGCCCTATTCGTGCTCGGCCTGGAT
CCATTCGATCCGCCGGGGCGTCGATGTCGCCCGCGCCACCGGCCGCGCCCATGTGGTCGGCACCACCGGCGCCACCTCGG
AACGCGCCGCCCTCGACCATCTCGGACTCGACGCCGAGGCGGTGATCGACATGGGCGATTTCGTCGGCGGCCTGCTCAAA
TACCTCCGCGACCACCCCATCCCCCACCTTACTATCGCCGGCGGCTTCGCCAAGCTGTCGAAACTGGCCGACGGCGCCCT
GGATCTGCATTCCAAACGCGCCCAGGTCGACATCCCCGCCCTGGCCCGCCGGCTGGCCGCCCTGGGGGCGACGCAAGCGG
TGGTGTCCGAGGCCGAACGCGCCAATACGGCGCTCGAGGTTCTCACCCTGGCCCAAGCCGCCGGCCTGCCGTTGGCCACA
GCGATTGCCTTTGAGGCGGCCACCGTGGCGCGGGCCGTCCTGGGCGAGGCCCCGGTGCGGGTAAGCGTGCTGGTGGTCGA
TCGCGGCGGACGGGTGGTGGGGGAGGGTGGGTGA

Upstream 100 bases:

>100_bases
GCCGAAAAAGTCGCCGCCGAGTAAGCCAAAACCCGCGCCTTCGCGTCGCCGCATCGGCTAAAGTCCCTCCCCCAAGGACC
AAACGTGGGGAGGGGCGGCG

Downstream 100 bases:

>100_bases
GGGGGGCTCACCCGCATTTATCGGTATCGGCAGGCGGTTCTTGGCCCGGCTCCTCGCCGCTCTTGTTAAGATTGTTGAGG
GAAATACAGTAGGTTAACCA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MDEADEGRSLRRGWTTGACATAALKAALEALVDRPFPDPVALTLPRGERPAFALATRETGPGWARAGVIKDAGDDPDVTH
GALIEATARLLPKGSGLIFRAGSGVGTVTKPGLPLAVGEPAINPVPRAMMTEVATAAGLADLEISIAVAQGASIALRTWN
PRLGILGGLSILGTTGVVVPYSCSAWIHSIRRGVDVARATGRAHVVGTTGATSERAALDHLGLDAEAVIDMGDFVGGLLK
YLRDHPIPHLTIAGGFAKLSKLADGALDLHSKRAQVDIPALARRLAALGATQAVVSEAERANTALEVLTLAQAAGLPLAT
AIAFEAATVARAVLGEAPVRVSVLVVDRGGRVVGEGG

Sequences:

>Translated_357_residues
MDEADEGRSLRRGWTTGACATAALKAALEALVDRPFPDPVALTLPRGERPAFALATRETGPGWARAGVIKDAGDDPDVTH
GALIEATARLLPKGSGLIFRAGSGVGTVTKPGLPLAVGEPAINPVPRAMMTEVATAAGLADLEISIAVAQGASIALRTWN
PRLGILGGLSILGTTGVVVPYSCSAWIHSIRRGVDVARATGRAHVVGTTGATSERAALDHLGLDAEAVIDMGDFVGGLLK
YLRDHPIPHLTIAGGFAKLSKLADGALDLHSKRAQVDIPALARRLAALGATQAVVSEAERANTALEVLTLAQAAGLPLAT
AIAFEAATVARAVLGEAPVRVSVLVVDRGGRVVGEGG
>Mature_357_residues
MDEADEGRSLRRGWTTGACATAALKAALEALVDRPFPDPVALTLPRGERPAFALATRETGPGWARAGVIKDAGDDPDVTH
GALIEATARLLPKGSGLIFRAGSGVGTVTKPGLPLAVGEPAINPVPRAMMTEVATAAGLADLEISIAVAQGASIALRTWN
PRLGILGGLSILGTTGVVVPYSCSAWIHSIRRGVDVARATGRAHVVGTTGATSERAALDHLGLDAEAVIDMGDFVGGLLK
YLRDHPIPHLTIAGGFAKLSKLADGALDLHSKRAQVDIPALARRLAALGATQAVVSEAERANTALEVLTLAQAAGLPLAT
AIAFEAATVARAVLGEAPVRVSVLVVDRGGRVVGEGG

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_RHORT (Q8GDE1)

Other databases:

- EMBL:   AY150801
- EMBL:   CP000230
- RefSeq:   YP_428078.1
- ProteinModelPortal:   Q8GDE1
- SMR:   Q8GDE1
- STRING:   Q8GDE1
- GeneID:   3836441
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A2996
- NMPDR:   fig|1085.1.peg.636
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   RRUB269796:RRU_A2996-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 36399; Mature: 36399

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEADEGRSLRRGWTTGACATAALKAALEALVDRPFPDPVALTLPRGERPAFALATRETG
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCC
PGWARAGVIKDAGDDPDVTHGALIEATARLLPKGSGLIFRAGSGVGTVTKPGLPLAVGEP
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCC
AINPVPRAMMTEVATAAGLADLEISIAVAQGASIALRTWNPRLGILGGLSILGTTGVVVP
CCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCHHCCHHHHCCCCEEEC
YSCSAWIHSIRRGVDVARATGRAHVVGTTGATSERAALDHLGLDAEAVIDMGDFVGGLLK
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLRDHPIPHLTIAGGFAKLSKLADGALDLHSKRAQVDIPALARRLAALGATQAVVSEAER
HHHHCCCCEEEEECHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHH
ANTALEVLTLAQAAGLPLATAIAFEAATVARAVLGEAPVRVSVLVVDRGGRVVGEGG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEECCCC
>Mature Secondary Structure
MDEADEGRSLRRGWTTGACATAALKAALEALVDRPFPDPVALTLPRGERPAFALATRETG
CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCC
PGWARAGVIKDAGDDPDVTHGALIEATARLLPKGSGLIFRAGSGVGTVTKPGLPLAVGEP
CCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCC
AINPVPRAMMTEVATAAGLADLEISIAVAQGASIALRTWNPRLGILGGLSILGTTGVVVP
CCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCHHCCHHHHCCCCEEEC
YSCSAWIHSIRRGVDVARATGRAHVVGTTGATSERAALDHLGLDAEAVIDMGDFVGGLLK
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLRDHPIPHLTIAGGFAKLSKLADGALDLHSKRAQVDIPALARRLAALGATQAVVSEAER
HHHHCCCCEEEEECHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHH
ANTALEVLTLAQAAGLPLATAIAFEAATVARAVLGEAPVRVSVLVVDRGGRVVGEGG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA