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The map label for this gene is yrbE [C]

Identifier: 83594240

GI number: 83594240

Start: 3351889

End: 3352716

Strand: Direct

Name: yrbE [C]

Synonym: Rru_A2908

Alternate gene names: 83594240

Gene position: 3351889-3352716 (Clockwise)

Preceding gene: 83594239

Following gene: 83594241

Centisome position: 77.0

GC content: 64.25

Gene sequence:

>828_bases
TTGGACAGCCCCAAGACAAAACCCGGCCTGTCCCAGGCCCTGCTCAAGGCCGTGGAACGCCTGGGCCAGGGGGTCATCGC
CGGGGTGGCCGAGATCGGTCAGGCGTCGCTTCTTGGCGCCGAAAGCCTTTATTGGCTGGTAGTCGGGCGGTTTCGCGGTC
AGCCGGTGCGCCTGGGCGCCATTGTCGAGCAGGCCATGGAGATGGGCATCCGCGCCCTGCCGATCGTGCTGGTGATGAAT
TTCACCATCGGCATGATGCTGGCGATCCAGGGAATCTACAGCCTGCGCATGTTCGGGGCCGAGCAGCAGGTGGTGCTGGG
CGTGGCCTTTTCCGTGGTCCGCGAATTCGCGCCCCTGATCACCGGCATTCTGGTCGCCGGCCGTTCGGGATCGGCGATCG
CCGCCCGCCTGGGCACCATGACCATCAATCAGGAGATCGACGCCCTGACGGTGATGGGCATCGTGCCCGTCCGCTATTTG
GTGGCCCCGCCGTTGATCGCCGCCCTGGTGATGGTGCCGCTGATGACCTTTCTCGGCATGCTGGTCGCCCTGCTTGGCGC
CTCGCTGACCGTGCGCATCGACCTTGGCATGTCGCTTTCGGCCTTTTTTCATCAAACGCTTGATATCCTGCGCCTGATCG
ATCTGACCCATGGCCTGGGCAAAAGCGCCTTGTTCGCCTTGCAAATCGTGCTGGTCGGCGTGGTCAACGGCGTATCGGTC
AGCGGCGGAGCCGAGGGCGTGGGCAAGATGACCACCCGGTCGGTCGTCCAGGCGATCAGCGCGATCATCGTCACCGACAT
GGTCTTCGCCTTCATCCTGACCCGGTAG

Upstream 100 bases:

>100_bases
CCGATGCCATGCGGGTGATCACCCTGGGCCGCCTTGATCAGGTCTTCCCCATCCGCGCCAGCGTCGACGACGCCCTGGCC
GCCGCCGGCTGAGACCGGCC

Downstream 100 bases:

>100_bases
GACCCATGGCCCAGATCCCCCCTCCCGCCCTCCCCACCCCGGCGCCGGACCTTCCGGCGATCGAGGTGCGCGATCTCGTC
ACCTATTACGGCAAGCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDSPKTKPGLSQALLKAVERLGQGVIAGVAEIGQASLLGAESLYWLVVGRFRGQPVRLGAIVEQAMEMGIRALPIVLVMN
FTIGMMLAIQGIYSLRMFGAEQQVVLGVAFSVVREFAPLITGILVAGRSGSAIAARLGTMTINQEIDALTVMGIVPVRYL
VAPPLIAALVMVPLMTFLGMLVALLGASLTVRIDLGMSLSAFFHQTLDILRLIDLTHGLGKSALFALQIVLVGVVNGVSV
SGGAEGVGKMTTRSVVQAISAIIVTDMVFAFILTR

Sequences:

>Translated_275_residues
MDSPKTKPGLSQALLKAVERLGQGVIAGVAEIGQASLLGAESLYWLVVGRFRGQPVRLGAIVEQAMEMGIRALPIVLVMN
FTIGMMLAIQGIYSLRMFGAEQQVVLGVAFSVVREFAPLITGILVAGRSGSAIAARLGTMTINQEIDALTVMGIVPVRYL
VAPPLIAALVMVPLMTFLGMLVALLGASLTVRIDLGMSLSAFFHQTLDILRLIDLTHGLGKSALFALQIVLVGVVNGVSV
SGGAEGVGKMTTRSVVQAISAIIVTDMVFAFILTR
>Mature_275_residues
MDSPKTKPGLSQALLKAVERLGQGVIAGVAEIGQASLLGAESLYWLVVGRFRGQPVRLGAIVEQAMEMGIRALPIVLVMN
FTIGMMLAIQGIYSLRMFGAEQQVVLGVAFSVVREFAPLITGILVAGRSGSAIAARLGTMTINQEIDALTVMGIVPVRYL
VAPPLIAALVMVPLMTFLGMLVALLGASLTVRIDLGMSLSAFFHQTLDILRLIDLTHGLGKSALFALQIVLVGVVNGVSV
SGGAEGVGKMTTRSVVQAISAIIVTDMVFAFILTR

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=260, Percent_Identity=30.3846153846154, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 28915; Mature: 28915

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA