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The map label for this gene is ocd2 [H]

Identifier: 83594199

GI number: 83594199

Start: 3301858

End: 3302820

Strand: Direct

Name: ocd2 [H]

Synonym: Rru_A2867

Alternate gene names: 83594199

Gene position: 3301858-3302820 (Clockwise)

Preceding gene: 83594196

Following gene: 83594200

Centisome position: 75.86

GC content: 69.89

Gene sequence:

>963_bases
ATGCGCATGATCGACGCCGACGCCGTCCGCCGCTGCCTGCCCTGGCCCGCCCTGATCGACGCCCTGAGCGCCCGCTTCGC
CGCCGGCTGCGAAGCCCCCGTGCGCCACCATCACCCGATGACCCTGCCCGGCGAGCCCGAGGCCACCTTGCTGTTGATGC
CGGCCTGGGCTTTGGATGGTCCGCCCGAAAGCCGCATCATCATGGTCAAGGTCGCCACCGTCCATCCGGGCAACGGGGCG
CGGGGCCTGCCGGCGGTGGCCGCCAGCGTGCTGGCCATCGACGGCGGCACCGGCCGGCCGCTCGCCCTTCTTGATGGCGG
CGAATTGACGGCGCGGCGGACGGCGGCGACCAGCGCCCTGGCCGCCCGCTTCCTGGCGCGACGCGACGCCCGCGTGCTGG
TCGCCGTCGGCGCCGGCCGGATGATCGCCAATCTGATCGAAGCCCATCTCTGCGCCAGCCCCTCGATCGAGACGATTCGG
ATCTGGGCCCGCGACCCGGCCAAGGCGGCCGATCTGTGCGAAGATCTGGCCGACCGTCTGCCTTTCGCCCCCCAGGTCGC
CCCCGATCTTCAAACCGCCGTGCGCGGCGCCGATATCATCACCTGCGCCACGCTGTCGCGCGAGCCGTTGGTCCATGGCG
CGTGGCTGGCCGAAGGCAGCCACCTTGATCTGGTCGGCGCCTTTACCCCTGAGATGCGCGAAAGCGACGACGAGGCCATG
CGCCGGGCCACGGTTTTCGTCGATACCCGGGCCGGGGCCTGCCATGAAGGCGGCGATATCGTTCAGGCGATGTCGTCGGG
CGCGCTGACCACCCAGGACATCGGCGGCGACCTGTTCGACCTTGTGCGCGGCGATCATCCCGGCCGCACCTCGGCAAGCG
AGATCACCTTGTTCAAGTCAGTCGGCGCGGCGATCGAAGATCTGGCCGCCACCGATCTAGCGTTTTCGCTCTATAAGGAT
TAG

Upstream 100 bases:

>100_bases
AACCGGTGGGCGACTTTCCCCCTGATGTCTTGCCGGTTTCCCCCTAGGGGCCTCCCGGGGTAGGGTACTCACCTGACCTC
ACCGGGGAGTGCCTTTGTCC

Downstream 100 bases:

>100_bases
GAGGAGGCGGTCGGGGGTACCGCTAAATAGGCATAGACCATCTGATATGTTAAAGCTATCTTCTCCGAGATGGGTTTCAC
GGGCAACGCCCGCCGAAAAA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRMIDADAVRRCLPWPALIDALSARFAAGCEAPVRHHHPMTLPGEPEATLLLMPAWALDGPPESRIIMVKVATVHPGNGA
RGLPAVAASVLAIDGGTGRPLALLDGGELTARRTAATSALAARFLARRDARVLVAVGAGRMIANLIEAHLCASPSIETIR
IWARDPAKAADLCEDLADRLPFAPQVAPDLQTAVRGADIITCATLSREPLVHGAWLAEGSHLDLVGAFTPEMRESDDEAM
RRATVFVDTRAGACHEGGDIVQAMSSGALTTQDIGGDLFDLVRGDHPGRTSASEITLFKSVGAAIEDLAATDLAFSLYKD

Sequences:

>Translated_320_residues
MRMIDADAVRRCLPWPALIDALSARFAAGCEAPVRHHHPMTLPGEPEATLLLMPAWALDGPPESRIIMVKVATVHPGNGA
RGLPAVAASVLAIDGGTGRPLALLDGGELTARRTAATSALAARFLARRDARVLVAVGAGRMIANLIEAHLCASPSIETIR
IWARDPAKAADLCEDLADRLPFAPQVAPDLQTAVRGADIITCATLSREPLVHGAWLAEGSHLDLVGAFTPEMRESDDEAM
RRATVFVDTRAGACHEGGDIVQAMSSGALTTQDIGGDLFDLVRGDHPGRTSASEITLFKSVGAAIEDLAATDLAFSLYKD
>Mature_320_residues
MRMIDADAVRRCLPWPALIDALSARFAAGCEAPVRHHHPMTLPGEPEATLLLMPAWALDGPPESRIIMVKVATVHPGNGA
RGLPAVAASVLAIDGGTGRPLALLDGGELTARRTAATSALAARFLARRDARVLVAVGAGRMIANLIEAHLCASPSIETIR
IWARDPAKAADLCEDLADRLPFAPQVAPDLQTAVRGADIITCATLSREPLVHGAWLAEGSHLDLVGAFTPEMRESDDEAM
RRATVFVDTRAGACHEGGDIVQAMSSGALTTQDIGGDLFDLVRGDHPGRTSASEITLFKSVGAAIEDLAATDLAFSLYKD

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=305, Percent_Identity=33.7704918032787, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI62241008, Length=284, Percent_Identity=33.4507042253521, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24642678, Length=347, Percent_Identity=28.5302593659942, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33683; Mature: 33683

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMIDADAVRRCLPWPALIDALSARFAAGCEAPVRHHHPMTLPGEPEATLLLMPAWALDG
CCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCCC
PPESRIIMVKVATVHPGNGARGLPAVAASVLAIDGGTGRPLALLDGGELTARRTAATSAL
CCCCCEEEEEEEEECCCCCCCCCHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHH
AARFLARRDARVLVAVGAGRMIANLIEAHLCASPSIETIRIWARDPAKAADLCEDLADRL
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHC
PFAPQVAPDLQTAVRGADIITCATLSREPLVHGAWLAEGSHLDLVGAFTPEMRESDDEAM
CCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCHHCCCHHHHH
RRATVFVDTRAGACHEGGDIVQAMSSGALTTQDIGGDLFDLVRGDHPGRTSASEITLFKS
HEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHCCCHHHHHHCCCCCCCCCHHHHHHHHH
VGAAIEDLAATDLAFSLYKD
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRMIDADAVRRCLPWPALIDALSARFAAGCEAPVRHHHPMTLPGEPEATLLLMPAWALDG
CCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCEEEEEEEECCCCC
PPESRIIMVKVATVHPGNGARGLPAVAASVLAIDGGTGRPLALLDGGELTARRTAATSAL
CCCCCEEEEEEEEECCCCCCCCCHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHH
AARFLARRDARVLVAVGAGRMIANLIEAHLCASPSIETIRIWARDPAKAADLCEDLADRL
HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHC
PFAPQVAPDLQTAVRGADIITCATLSREPLVHGAWLAEGSHLDLVGAFTPEMRESDDEAM
CCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCHHCCCHHHHH
RRATVFVDTRAGACHEGGDIVQAMSSGALTTQDIGGDLFDLVRGDHPGRTSASEITLFKS
HEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHCCCHHHHHHCCCCCCCCCHHHHHHHHH
VGAAIEDLAATDLAFSLYKD
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]