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The map label for this gene is vapA' [H]

Identifier: 83594111

GI number: 83594111

Start: 3213075

End: 3213407

Strand: Direct

Name: vapA' [H]

Synonym: Rru_A2779

Alternate gene names: 83594111

Gene position: 3213075-3213407 (Clockwise)

Preceding gene: 83594110

Following gene: 83594115

Centisome position: 73.82

GC content: 63.66

Gene sequence:

>333_bases
ATGAGCGAGGCACTAGGCCTCCGTGTGAAGAACCCCGCTCATCCCGGCGGTTTCGTCAAAAGCGAGATCATCGAGGCGCT
CGGCCTATCGGTGACGAGCGCGGCGCAGGTTCTTGGTGTTACGCGGGCGGCGTTGTCGGCCGTGCTGAACGAGCGCGCGC
ATCTTTCACCGGAAATGGCGCTGCGGATCGAGAAGGCGTTCGGTGTGTCGATGGATACGCTTATGCGGATGCAGAACAGC
TACGACATCGCCCAGGCCCGCAAGCGGGAGGGGGAGATCACCGTCGCGCCCTTCCAGGGAAAGCCGCAGGATCGGCAAGC
GACGCCGATCTGA

Upstream 100 bases:

>100_bases
CCTGTTCGTAACCAAAAACTGGCGGATCACCTTCCGGATCGACCAAAGCGAAATCGAGATCATCGACCTCGACTATGAAG
ATTATCACTAGGAGATGTCC

Downstream 100 bases:

>100_bases
GCCGGGAACACGCGGCGACCGATCGCCAAGGGGTCGCTTTAAAAACGGCAAGCCGCGAGCGGAGGGACCGCAACGGCCGT
CCGCTCGCGACATCCCATCC

Product: plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSEALGLRVKNPAHPGGFVKSEIIEALGLSVTSAAQVLGVTRAALSAVLNERAHLSPEMALRIEKAFGVSMDTLMRMQNS
YDIAQARKREGEITVAPFQGKPQDRQATPI

Sequences:

>Translated_110_residues
MSEALGLRVKNPAHPGGFVKSEIIEALGLSVTSAAQVLGVTRAALSAVLNERAHLSPEMALRIEKAFGVSMDTLMRMQNS
YDIAQARKREGEITVAPFQGKPQDRQATPI
>Mature_109_residues
SEALGLRVKNPAHPGGFVKSEIIEALGLSVTSAAQVLGVTRAALSAVLNERAHLSPEMALRIEKAFGVSMDTLMRMQNSY
DIAQARKREGEITVAPFQGKPQDRQATPI

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 11844; Mature: 11713

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEALGLRVKNPAHPGGFVKSEIIEALGLSVTSAAQVLGVTRAALSAVLNERAHLSPEMA
CCCCCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LRIEKAFGVSMDTLMRMQNSYDIAQARKREGEITVAPFQGKPQDRQATPI
HHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SEALGLRVKNPAHPGGFVKSEIIEALGLSVTSAAQVLGVTRAALSAVLNERAHLSPEMA
CCCCCCEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LRIEKAFGVSMDTLMRMQNSYDIAQARKREGEITVAPFQGKPQDRQATPI
HHHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]