| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is ycbC [C]
Identifier: 83593886
GI number: 83593886
Start: 2967013
End: 2967633
Strand: Reverse
Name: ycbC [C]
Synonym: Rru_A2551
Alternate gene names: 83593886
Gene position: 2967633-2967013 (Counterclockwise)
Preceding gene: 83593889
Following gene: 83593885
Centisome position: 68.18
GC content: 72.14
Gene sequence:
>621_bases GTGAGACCTCGCCGAAATACGCTATGTCATGTCGCTGAAGAAACGGATCGGGCTTTCCCGCCTGCCGGACGGGCGGGCGA GGGCTGCGCCGTCGTCGTACTCGGCGCGCGGGTGCTTGGTGACGGACGCCCGTCCCCGGCGCTGGAACGGCGGGTTCTTC ATGGGGTGGCCCTGGCGCGCCGCCATCCCGCCGCCCGTTTGTTGCTCAGCGGCGGCGCCACCGGCGGCCCCTTGGACGAG GCCTGGGTGATGGCGACCCTGGCTTTGGGCGCGGGCATCGCCGCCGAGCGCCTGATCCTGGAGGACCGGGCGCTTGATAC CCTGGGCAACGCCCGCCATAGCCTGCCGCTGCTGCGCGCCGCCAGAATCGGCCGGGTGCTGCTGGTGACCGATCCCAGCC ATATGCCCCGGGCGTTGTTGAGCTTTCGCGCCGTGGCGGGCGATCATCTGCGGTTGCGCGCCGCGCCCACCCCGTGCCCG GCCGGCGGCTGGCGGAACCGGCGGGCGATTTTCGGCGTCTTGCGCGAAATGGCGGCCCTGGGACTTGTCCTGCCGCGCCT GCTGATCGCCCGCCGCCGCGCCGCTTCGCCCCTTGACTTGCCACCGGATGCCCCGTCATGA
Upstream 100 bases:
>100_bases ATGCCATCGATGCTCTTGCTATCGTTGCGGATTGGGCGCGGCGGCGGTGCCGGGCGCGGGATGGCCTTAATAATCCAGAT ATTTGGAGCGATTGTCTACC
Downstream 100 bases:
>100_bases CCGTTTCCCCTCCGCCGCCGCCCGCCGCCCCGGTCCGGCCGCTTGCCGGTTTGCGCGTGCTTGACGCCGCCACCTTCATC GCCGCCCCCTTCGCCGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS
Sequences:
>Translated_206_residues MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS >Mature_206_residues MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21869; Mature: 21869
Theoretical pI: Translated: 12.13; Mature: 12.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALAR CCCCCCHHEEHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHH RHPAARLLLSGGATGGPLDEAWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRA CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH ARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCPAGGWRNRRAIFGVLREMAAL HHHCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH GLVLPRLLIARRRAASPLDLPPDAPS HHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALAR CCCCCCHHEEHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHH RHPAARLLLSGGATGGPLDEAWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRA CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH ARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCPAGGWRNRRAIFGVLREMAAL HHHCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH GLVLPRLLIARRRAASPLDLPPDAPS HHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA