Definition Rhodospirillum rubrum ATCC 11170 chromosome, complete genome.
Accession NC_007643
Length 4,352,825

Click here to switch to the map view.

The map label for this gene is ycbC [C]

Identifier: 83593886

GI number: 83593886

Start: 2967013

End: 2967633

Strand: Reverse

Name: ycbC [C]

Synonym: Rru_A2551

Alternate gene names: 83593886

Gene position: 2967633-2967013 (Counterclockwise)

Preceding gene: 83593889

Following gene: 83593885

Centisome position: 68.18

GC content: 72.14

Gene sequence:

>621_bases
GTGAGACCTCGCCGAAATACGCTATGTCATGTCGCTGAAGAAACGGATCGGGCTTTCCCGCCTGCCGGACGGGCGGGCGA
GGGCTGCGCCGTCGTCGTACTCGGCGCGCGGGTGCTTGGTGACGGACGCCCGTCCCCGGCGCTGGAACGGCGGGTTCTTC
ATGGGGTGGCCCTGGCGCGCCGCCATCCCGCCGCCCGTTTGTTGCTCAGCGGCGGCGCCACCGGCGGCCCCTTGGACGAG
GCCTGGGTGATGGCGACCCTGGCTTTGGGCGCGGGCATCGCCGCCGAGCGCCTGATCCTGGAGGACCGGGCGCTTGATAC
CCTGGGCAACGCCCGCCATAGCCTGCCGCTGCTGCGCGCCGCCAGAATCGGCCGGGTGCTGCTGGTGACCGATCCCAGCC
ATATGCCCCGGGCGTTGTTGAGCTTTCGCGCCGTGGCGGGCGATCATCTGCGGTTGCGCGCCGCGCCCACCCCGTGCCCG
GCCGGCGGCTGGCGGAACCGGCGGGCGATTTTCGGCGTCTTGCGCGAAATGGCGGCCCTGGGACTTGTCCTGCCGCGCCT
GCTGATCGCCCGCCGCCGCGCCGCTTCGCCCCTTGACTTGCCACCGGATGCCCCGTCATGA

Upstream 100 bases:

>100_bases
ATGCCATCGATGCTCTTGCTATCGTTGCGGATTGGGCGCGGCGGCGGTGCCGGGCGCGGGATGGCCTTAATAATCCAGAT
ATTTGGAGCGATTGTCTACC

Downstream 100 bases:

>100_bases
CCGTTTCCCCTCCGCCGCCGCCCGCCGCCCCGGTCCGGCCGCTTGCCGGTTTGCGCGTGCTTGACGCCGCCACCTTCATC
GCCGCCCCCTTCGCCGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE
AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP
AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS

Sequences:

>Translated_206_residues
MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE
AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP
AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS
>Mature_206_residues
MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALARRHPAARLLLSGGATGGPLDE
AWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRAARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCP
AGGWRNRRAIFGVLREMAALGLVLPRLLIARRRAASPLDLPPDAPS

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21869; Mature: 21869

Theoretical pI: Translated: 12.13; Mature: 12.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALAR
CCCCCCHHEEHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHH
RHPAARLLLSGGATGGPLDEAWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRA
CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
ARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCPAGGWRNRRAIFGVLREMAAL
HHHCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
GLVLPRLLIARRRAASPLDLPPDAPS
HHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRPRRNTLCHVAEETDRAFPPAGRAGEGCAVVVLGARVLGDGRPSPALERRVLHGVALAR
CCCCCCHHEEHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHHHHHHHHHHHHHH
RHPAARLLLSGGATGGPLDEAWVMATLALGAGIAAERLILEDRALDTLGNARHSLPLLRA
CCCHHHEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
ARIGRVLLVTDPSHMPRALLSFRAVAGDHLRLRAAPTPCPAGGWRNRRAIFGVLREMAAL
HHHCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
GLVLPRLLIARRRAASPLDLPPDAPS
HHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA