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The map label for this gene is yrdA [H]

Identifier: 83593755

GI number: 83593755

Start: 2819667

End: 2820236

Strand: Reverse

Name: yrdA [H]

Synonym: Rru_A2420

Alternate gene names: 83593755

Gene position: 2820236-2819667 (Counterclockwise)

Preceding gene: 83593756

Following gene: 83593754

Centisome position: 64.79

GC content: 67.72

Gene sequence:

>570_bases
ATGTCCGCCTCCGAGCCTCCCGCCGTTCCCTTGGGCACTCCCGCCGCCGCCGGGCCGATCATCCTGCCCCATCGCGGCAT
CTGGCCGAGGATCGCCAGCGACGCCTTCATCGCGCCCGGCGCCGTTGTCATCGGCGATGTGGAAATCGGCGCCCGGACCA
GCGTGTGGTTCGGCTGCGTGCTGCGCGGCGACGTTCACCACATTCGCATCGGCGCGCGCACCAACATCCAAGACGGCACG
ATCGTCCATGTCACCGGCGGTCATCTCGGCACCCTCATCGGCGATGATATCACCATCGGCCACCGCGCCCTGCTGCACGC
CTGCACCCTGGAAAGCAACTGCTTCGTCGGCATGGGCGCCATCGTCATGGACGGCGCGGTGGTCGAGTCCTGGGCGATGG
TCGCCGCCGGCGCCCTGGTCACGCCGGGCAAGCGGGTGGAAAGCCGCAGTCTCTGGGCGGGCAGCCCGGCGGCGCGCAAG
CGCGACCTGAGCGCCGAAGACATCGCTTTTTTCCCGGAATCGGCCCGGAAATACGCCGATCTCGCCGATATATACGTCGA
AGAAATGTGA

Upstream 100 bases:

>100_bases
CCCCGAAACCCTGGGGCTTGATCAGCAGCCGCTGTTTCCCTGAGCGACATAAGGGGCGTCCGTCGGGCGCCCCTTTTTCA
TTGAAGAAAGGGTCGCGACC

Downstream 100 bases:

>100_bases
AATATATAGAAATACCACTGTTGACATGCTGAATTAAGCTGTGGTTCTTTGTTGAACCGCCGCCGGGTCCGTCCTATATC
CGGTCACACTACGCGCCGAT

Product: hexapaptide repeat-containing transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSASEPPAVPLGTPAAAGPIILPHRGIWPRIASDAFIAPGAVVIGDVEIGARTSVWFGCVLRGDVHHIRIGARTNIQDGT
IVHVTGGHLGTLIGDDITIGHRALLHACTLESNCFVGMGAIVMDGAVVESWAMVAAGALVTPGKRVESRSLWAGSPAARK
RDLSAEDIAFFPESARKYADLADIYVEEM

Sequences:

>Translated_189_residues
MSASEPPAVPLGTPAAAGPIILPHRGIWPRIASDAFIAPGAVVIGDVEIGARTSVWFGCVLRGDVHHIRIGARTNIQDGT
IVHVTGGHLGTLIGDDITIGHRALLHACTLESNCFVGMGAIVMDGAVVESWAMVAAGALVTPGKRVESRSLWAGSPAARK
RDLSAEDIAFFPESARKYADLADIYVEEM
>Mature_188_residues
SASEPPAVPLGTPAAAGPIILPHRGIWPRIASDAFIAPGAVVIGDVEIGARTSVWFGCVLRGDVHHIRIGARTNIQDGTI
VHVTGGHLGTLIGDDITIGHRALLHACTLESNCFVGMGAIVMDGAVVESWAMVAAGALVTPGKRVESRSLWAGSPAARKR
DLSAEDIAFFPESARKYADLADIYVEEM

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=177, Percent_Identity=42.3728813559322, Blast_Score=150, Evalue=4e-38,
Organism=Escherichia coli, GI87081681, Length=158, Percent_Identity=37.9746835443038, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787667, Length=156, Percent_Identity=37.1794871794872, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19814; Mature: 19683

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASEPPAVPLGTPAAAGPIILPHRGIWPRIASDAFIAPGAVVIGDVEIGARTSVWFGCV
CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEEEEECCCCCCEEEEEE
LRGDVHHIRIGARTNIQDGTIVHVTGGHLGTLIGDDITIGHRALLHACTLESNCFVGMGA
EECCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCEEHHHHHHHHHHCCCCCCEEECCH
IVMDGAVVESWAMVAAGALVTPGKRVESRSLWAGSPAARKRDLSAEDIAFFPESARKYAD
HHHCCHHHHHHHHHHCCEEECCCCCCCCCCEECCCCCHHHCCCCCCCEEECCHHHHHHHH
LADIYVEEM
HHHHHEECC
>Mature Secondary Structure 
SASEPPAVPLGTPAAAGPIILPHRGIWPRIASDAFIAPGAVVIGDVEIGARTSVWFGCV
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEEEEECCCCCCEEEEEE
LRGDVHHIRIGARTNIQDGTIVHVTGGHLGTLIGDDITIGHRALLHACTLESNCFVGMGA
EECCEEEEEECCCCCCCCCEEEEECCCCEEEEECCCEEHHHHHHHHHHCCCCCCEEECCH
IVMDGAVVESWAMVAAGALVTPGKRVESRSLWAGSPAARKRDLSAEDIAFFPESARKYAD
HHHCCHHHHHHHHHHCCEEECCCCCCCCCCEECCCCCHHHCCCCCCCEEECCHHHHHHHH
LADIYVEEM
HHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]