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The map label for this gene is aer [H]

Identifier: 83593713

GI number: 83593713

Start: 2769874

End: 2770398

Strand: Reverse

Name: aer [H]

Synonym: Rru_A2378

Alternate gene names: 83593713

Gene position: 2770398-2769874 (Counterclockwise)

Preceding gene: 83593714

Following gene: 83593712

Centisome position: 63.65

GC content: 54.86

Gene sequence:

>525_bases
ATGTCGCGGCCAATCGTGACTCCCAGCGGAGTCGAGCGCTTCTTCGGCGAAGACCAGATCATTGTTTCGAAGACAGATCT
AAAGGGCATCATTACCTATGCCAATGATGTCTTCTTGAAGGTCGCCGGCTACAAGGAGGCTGAAATCCTTGGAAAACCCC
ATAATATCATCCGCCATCCCGATATGCCGGCTTGCGTCTTCAAGCTTCTGTGGGACCGTATCCCGGCAGGTCACGAAGTC
TTCGCCTATGTGATCAATATGGCCAAGAACGGTGATCATTACTGGGTTTATGCCCATATCACCCCGACGTTTTCGGCCTC
CGGGCAGGTCATCGGCTATCATTCCAGCCGCCGCGTTCCCGAAGCCCGGATTCTTCCCGGCATCAAGGATCTTTATGCGG
CGTTGCTGGACGAAGAGCGCCGCCATGCCTCGCCAAAAGACGGTATGGCCGCCGCCATGGTCCTCGTCGAGGATCTTTTG
GCAAAAACCGGCCAGACCTACGACGAATTCATTCATGGCCTGTGA

Upstream 100 bases:

>100_bases
GGATTGTTCCCCGTGTGGAAACGCGTCCCCGCGTCTCTTCCTTCGGCAAACAACGCGTTGTACGGGGGGCTTGGATCAGG
AGCCGCCCCAGGAGGGGTGC

Downstream 100 bases:

>100_bases
GGGGCGGCCTGTGAGAGCGGGGGCGCAATCGTCGGGAAGGGCAGTCGCCGAAGGTGACGATCTGACGATCAATATCGGCG
AGATGGCTTTTCGCCACAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEILGKPHNIIRHPDMPACVFKLLWDRIPAGHEV
FAYVINMAKNGDHYWVYAHITPTFSASGQVIGYHSSRRVPEARILPGIKDLYAALLDEERRHASPKDGMAAAMVLVEDLL
AKTGQTYDEFIHGL

Sequences:

>Translated_174_residues
MSRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEILGKPHNIIRHPDMPACVFKLLWDRIPAGHEV
FAYVINMAKNGDHYWVYAHITPTFSASGQVIGYHSSRRVPEARILPGIKDLYAALLDEERRHASPKDGMAAAMVLVEDLL
AKTGQTYDEFIHGL
>Mature_173_residues
SRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEILGKPHNIIRHPDMPACVFKLLWDRIPAGHEVF
AYVINMAKNGDHYWVYAHITPTFSASGQVIGYHSSRRVPEARILPGIKDLYAALLDEERRHASPKDGMAAAMVLVEDLLA
KTGQTYDEFIHGL

Specific function: Signal transducer for aerotaxis. The aerotactic response is the accumulation of cells around air bubbles. The nature of the sensory stimulus detected by this protein is the proton motive force or cellular redox state. It uses a FAD prosthetic group as a r

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=134, Percent_Identity=39.5522388059701, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF08447 PAS_3 [H]

EC number: NA

Molecular weight: Translated: 19451; Mature: 19319

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEILGKPHNIIRHP
CCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEECCEEEEEECCCCCHHHCCCCHHHCCCC
DMPACVFKLLWDRIPAGHEVFAYVINMAKNGDHYWVYAHITPTFSASGQVIGYHSSRRVP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEECCCCCCC
EARILPGIKDLYAALLDEERRHASPKDGMAAAMVLVEDLLAKTGQTYDEFIHGL
HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
SRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEILGKPHNIIRHP
CCCCCCCHHHHHHCCCCEEEEEECCCCEEEEECCEEEEEECCCCCHHHCCCCHHHCCCC
DMPACVFKLLWDRIPAGHEVFAYVINMAKNGDHYWVYAHITPTFSASGQVIGYHSSRRVP
CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEECCCCCCC
EARILPGIKDLYAALLDEERRHASPKDGMAAAMVLVEDLLAKTGQTYDEFIHGL
HHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9190831; 9380671 [H]