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The map label for this gene is yfdE [H]

Identifier: 83593438

GI number: 83593438

Start: 2437805

End: 2438923

Strand: Reverse

Name: yfdE [H]

Synonym: Rru_A2103

Alternate gene names: 83593438

Gene position: 2438923-2437805 (Counterclockwise)

Preceding gene: 83593439

Following gene: 83593437

Centisome position: 56.03

GC content: 67.65

Gene sequence:

>1119_bases
ATGCTGGGGGACGTCCTCAAGGACATGCGGGTGATCGACATGGGGCAATATATACCCGGTCCCTTCGCCTGCCTGCTGCT
CTCCGACCTTGGCGCCGAGGTCATCAAGATCGAACCGCCCGGCGGCGACCCCATGCGGCTTTTCGGTCCGCTCGATCCCG
ATGGCGTCAGCCCGCTCTACAAGGTGCTCAATCGCAACAAGACGGTGGTGACCCTCGATCTGAAAAGCGCCGAGGGCAAG
GCCGGCCTCGCCACCCTGATCGGGCGCTCCCATGGCCTGGTCGAAAGCTTTCGGCCCGGGGTGATGGAGCGGCTGGGCTT
TGGCGAGGCGGCCCTGGACGGACTGAACCGGGCGTTGGTCCATGTCATGGTTTCGGGCTTCGGCCAGACCGGTCCCTGGC
GCGATCGCGCCGGTCACGACATGACCTATCTGGCGCTGAGCGGCGCCTTGGCGATGAGCGGCACGGCCGATCAGCCGGTG
GCGCCCTTTCCGCCGCTGGCCGATCACGCCGGGGCGATGATGGCGGTGGTCGCCATGCTCGCTGGCTTGCTGCGGCGGTT
GCGCAGCGGGCGCGGCGGTCATTACGACCTGTCGCTTTATGAAAGCGCCCGCGCCCTCAACGCCATGGGGTTGGCCCTGG
CGGCCCGGGGGGCGCCGACCGCCCGCGGCCACGATCTGCTCAATGGCGGCGCGGCCTATTACAAGATCTATGGCACGGCC
GATGGCGGCCATCTCGCCGTCGCTCCGATCGAACCCAAGTTCTGGGCCGCCTTCTGCGCCGCCCTTGACCGGCCCGATCT
GGTCGCCCGCCAGAGCGAGCCTTTGCCGCAGACGGCGCTGATCGCCGAGCTTGAGGCGCTGTTTGCCACCCGCGATCGCC
AAGCCTGGATGGCCGTGCTGGGGCCGGCGGATTGCTGTGTTGAACCCGTATGCCGTCCCGACGAGGTTCTGGCCGGGGTT
CTGGAGGCGCCAAGGGGCATGGTCCATAGCGGAACGGATGGACTTATAGACCTTTTGTTGCCTATTCTCCTGGCCGAGTC
GGGGGCCGCGCCACGCCAACCCCTGCGCGAGGCGACGATCGACGAGGCGATCGCCCTGTGGGATCGGGTCGGGCATTAG

Upstream 100 bases:

>100_bases
GGAAAAGCTGCTGGCCGAATTCTCGCGCCAGCGCGGCGAAGAGATCGACGACGACAAGCTGCTGCTGGGATAGGACCCTT
ATCTGACGGGGGAGACGATC

Downstream 100 bases:

>100_bases
GCGGAGCCGGCGCTAAGTCCCCGGTTGACTGTGGTTTTATCAATTTCCACCCAACCGTGTTTCCCAATCCCGTCGAAAAA
GGCGCTTTTTCACGGCCTTC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MLGDVLKDMRVIDMGQYIPGPFACLLLSDLGAEVIKIEPPGGDPMRLFGPLDPDGVSPLYKVLNRNKTVVTLDLKSAEGK
AGLATLIGRSHGLVESFRPGVMERLGFGEAALDGLNRALVHVMVSGFGQTGPWRDRAGHDMTYLALSGALAMSGTADQPV
APFPPLADHAGAMMAVVAMLAGLLRRLRSGRGGHYDLSLYESARALNAMGLALAARGAPTARGHDLLNGGAAYYKIYGTA
DGGHLAVAPIEPKFWAAFCAALDRPDLVARQSEPLPQTALIAELEALFATRDRQAWMAVLGPADCCVEPVCRPDEVLAGV
LEAPRGMVHSGTDGLIDLLLPILLAESGAAPRQPLREATIDEAIALWDRVGH

Sequences:

>Translated_372_residues
MLGDVLKDMRVIDMGQYIPGPFACLLLSDLGAEVIKIEPPGGDPMRLFGPLDPDGVSPLYKVLNRNKTVVTLDLKSAEGK
AGLATLIGRSHGLVESFRPGVMERLGFGEAALDGLNRALVHVMVSGFGQTGPWRDRAGHDMTYLALSGALAMSGTADQPV
APFPPLADHAGAMMAVVAMLAGLLRRLRSGRGGHYDLSLYESARALNAMGLALAARGAPTARGHDLLNGGAAYYKIYGTA
DGGHLAVAPIEPKFWAAFCAALDRPDLVARQSEPLPQTALIAELEALFATRDRQAWMAVLGPADCCVEPVCRPDEVLAGV
LEAPRGMVHSGTDGLIDLLLPILLAESGAAPRQPLREATIDEAIALWDRVGH
>Mature_372_residues
MLGDVLKDMRVIDMGQYIPGPFACLLLSDLGAEVIKIEPPGGDPMRLFGPLDPDGVSPLYKVLNRNKTVVTLDLKSAEGK
AGLATLIGRSHGLVESFRPGVMERLGFGEAALDGLNRALVHVMVSGFGQTGPWRDRAGHDMTYLALSGALAMSGTADQPV
APFPPLADHAGAMMAVVAMLAGLLRRLRSGRGGHYDLSLYESARALNAMGLALAARGAPTARGHDLLNGGAAYYKIYGTA
DGGHLAVAPIEPKFWAAFCAALDRPDLVARQSEPLPQTALIAELEALFATRDRQAWMAVLGPADCCVEPVCRPDEVLAGV
LEAPRGMVHSGTDGLIDLLLPILLAESGAAPRQPLREATIDEAIALWDRVGH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=329, Percent_Identity=34.0425531914894, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI266456254, Length=329, Percent_Identity=34.0425531914894, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI266458393, Length=275, Percent_Identity=36.7272727272727, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=37.7431906614786, Blast_Score=149, Evalue=6e-36,
Organism=Homo sapiens, GI300863124, Length=339, Percent_Identity=27.7286135693215, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI300863128, Length=321, Percent_Identity=28.6604361370716, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI13376042, Length=339, Percent_Identity=25.3687315634218, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=35.3333333333333, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=39.3103448275862, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=39.3103448275862, Blast_Score=92, Evalue=6e-19,
Organism=Escherichia coli, GI87082093, Length=328, Percent_Identity=32.0121951219512, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788717, Length=343, Percent_Identity=25.9475218658892, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786222, Length=245, Percent_Identity=29.3877551020408, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=322, Percent_Identity=29.5031055900621, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI32564160, Length=318, Percent_Identity=29.874213836478, Blast_Score=127, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24585488, Length=352, Percent_Identity=32.3863636363636, Blast_Score=162, Evalue=4e-40,
Organism=Drosophila melanogaster, GI24648431, Length=336, Percent_Identity=27.6785714285714, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39289; Mature: 39289

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGDVLKDMRVIDMGQYIPGPFACLLLSDLGAEVIKIEPPGGDPMRLFGPLDPDGVSPLY
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCHHH
KVLNRNKTVVTLDLKSAEGKAGLATLIGRSHGLVESFRPGVMERLGFGEAALDGLNRALV
HHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHCHHHHHHHCCCHHHHHHHHHHHH
HVMVSGFGQTGPWRDRAGHDMTYLALSGALAMSGTADQPVAPFPPLADHAGAMMAVVAML
HHHHHHCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AGLLRRLRSGRGGHYDLSLYESARALNAMGLALAARGAPTARGHDLLNGGAAYYKIYGTA
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEEEC
DGGHLAVAPIEPKFWAAFCAALDRPDLVARQSEPLPQTALIAELEALFATRDRQAWMAVL
CCCEEEEEECCHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GPADCCVEPVCRPDEVLAGVLEAPRGMVHSGTDGLIDLLLPILLAESGAAPRQPLREATI
CCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
DEAIALWDRVGH
HHHHHHHHHCCC
>Mature Secondary Structure
MLGDVLKDMRVIDMGQYIPGPFACLLLSDLGAEVIKIEPPGGDPMRLFGPLDPDGVSPLY
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCCCHHH
KVLNRNKTVVTLDLKSAEGKAGLATLIGRSHGLVESFRPGVMERLGFGEAALDGLNRALV
HHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHCHHHHHHHCCCHHHHHHHHHHHH
HVMVSGFGQTGPWRDRAGHDMTYLALSGALAMSGTADQPVAPFPPLADHAGAMMAVVAML
HHHHHHCCCCCCCCCCCCCCEEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AGLLRRLRSGRGGHYDLSLYESARALNAMGLALAARGAPTARGHDLLNGGAAYYKIYGTA
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEEEC
DGGHLAVAPIEPKFWAAFCAALDRPDLVARQSEPLPQTALIAELEALFATRDRQAWMAVL
CCCEEEEEECCHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
GPADCCVEPVCRPDEVLAGVLEAPRGMVHSGTDGLIDLLLPILLAESGAAPRQPLREATI
CCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
DEAIALWDRVGH
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]