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The map label for this gene is ybdL [H]

Identifier: 83593419

GI number: 83593419

Start: 2412159

End: 2413343

Strand: Reverse

Name: ybdL [H]

Synonym: Rru_A2084

Alternate gene names: 83593419

Gene position: 2413343-2412159 (Counterclockwise)

Preceding gene: 83593429

Following gene: 83593418

Centisome position: 55.44

GC content: 66.5

Gene sequence:

>1185_bases
ATGAAAGCGGCCAACAGCCTGTTCAGCGGCCTGGGAACGACGATCTTTTCGGTGATGTCGCACCTTGCCCAGGAGTATGG
GGCGATCAACCTTGGACAGGGCTTTCCCGAAGGGCTGGAGCCGGCCGATGTGATCGCCGCCGCCGCCCGCTCGCTGGCGG
CCGGCCCCCACCAATATCCGCCGATGATGGGGCTGCCGGCCCTGCGTCAGGCGCTCGCCGCCCATGAAAAGCGCTTTTAT
GATCTCGATATCGACTGGCAAACCGAGGTGATGGTGACCTCGGGGGCCACCGAGGCCCTGGCCGACGCCCTGTTTGGGCT
GATCGAGCCCGGCGACGAGGTGGTGCTGATCGAGCCGCTCTATGACAGCTATCTGCCGATCATCCGCCGCGCCGGCGGCA
TTCCCCGGCTGGTCCGCCTGGAGCCGCCGCGCTGGTCGCTGCCGCGCGAGGCCCTGGCCGCGGCCTTTTCGCCGCGCACC
AAGCTGATCTTGGTCAATTCGCCGATGAACCCCTGCGCCAAGGTGTTCAGCGCCGACGAGATGGCCTTCATCGGCGACCT
GGCCATCGCCCATGACGCCTATATCGTTTGCGACGAGGTTTACGAGCATCTGGTTTTCGATGGTCAAAGCCACCGGCCCC
TCATGGCCCAGCCCGGCCTGCGCGAGCGTTGCGTGCGCATCGGGTCGGCCGGCAAGACCTTTTCGCTGACCAACTGGAAG
GTCGGCTATGTGATCGCCGCGCCCGAGGTGCTGGATCCGATCGCCAAGACCCACCAATACATCACCTTTACCACCCCCAT
CCCGCTGCAGCAGGCGGTGGCCGAAGGGCTGGCCAAGGATGACGCCTATTTCGCCGGCCTCGCCCACGACATGGCGGCGC
GGCGCGATCGCTTGGGCGCGGGCTTGCGACGGATCGGCTTCGAGGTGCTCGACTGCGCCGGCACCTATTTCCTGACCGCC
GATTTCCGCCCCCTCGGCTTTGCCGGCGACGATTTGGCCTTCTGCCGGCATATCACCTGCGAGGCCGGGGTGACCGCCGT
GCCGGTCAGCGCTTTTTATCAGCCCGGGCAGGGCGGAATCCCCACCTCTTTCGCCCGGTTCTGCTTTGCCAAGCGCGACG
ACGCCCTCGACGAGGCGGTCGCCCGCCTGGAGCGCCATTTCGCGGGCGGCCGACGAAACGCATAA

Upstream 100 bases:

>100_bases
GATCTTTTCCCCGCGCCCCCGCCCGGGGCGCATCTTTCCCCACGTCCCCGCCCGGGGGGACGCCTTTCTTCCTATCATCT
CTCTCAAGGACATCTTTTCG

Downstream 100 bases:

>100_bases
GAAAATCATTCGGGCTGACGACCTTCGACTTGACGCTGCTGTGGGGAAGCGGTAAATACCCCGCCTCCAGCGATGGCGGG
CGTAGCTCAGTTGGTTAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MKAANSLFSGLGTTIFSVMSHLAQEYGAINLGQGFPEGLEPADVIAAAARSLAAGPHQYPPMMGLPALRQALAAHEKRFY
DLDIDWQTEVMVTSGATEALADALFGLIEPGDEVVLIEPLYDSYLPIIRRAGGIPRLVRLEPPRWSLPREALAAAFSPRT
KLILVNSPMNPCAKVFSADEMAFIGDLAIAHDAYIVCDEVYEHLVFDGQSHRPLMAQPGLRERCVRIGSAGKTFSLTNWK
VGYVIAAPEVLDPIAKTHQYITFTTPIPLQQAVAEGLAKDDAYFAGLAHDMAARRDRLGAGLRRIGFEVLDCAGTYFLTA
DFRPLGFAGDDLAFCRHITCEAGVTAVPVSAFYQPGQGGIPTSFARFCFAKRDDALDEAVARLERHFAGGRRNA

Sequences:

>Translated_394_residues
MKAANSLFSGLGTTIFSVMSHLAQEYGAINLGQGFPEGLEPADVIAAAARSLAAGPHQYPPMMGLPALRQALAAHEKRFY
DLDIDWQTEVMVTSGATEALADALFGLIEPGDEVVLIEPLYDSYLPIIRRAGGIPRLVRLEPPRWSLPREALAAAFSPRT
KLILVNSPMNPCAKVFSADEMAFIGDLAIAHDAYIVCDEVYEHLVFDGQSHRPLMAQPGLRERCVRIGSAGKTFSLTNWK
VGYVIAAPEVLDPIAKTHQYITFTTPIPLQQAVAEGLAKDDAYFAGLAHDMAARRDRLGAGLRRIGFEVLDCAGTYFLTA
DFRPLGFAGDDLAFCRHITCEAGVTAVPVSAFYQPGQGGIPTSFARFCFAKRDDALDEAVARLERHFAGGRRNA
>Mature_394_residues
MKAANSLFSGLGTTIFSVMSHLAQEYGAINLGQGFPEGLEPADVIAAAARSLAAGPHQYPPMMGLPALRQALAAHEKRFY
DLDIDWQTEVMVTSGATEALADALFGLIEPGDEVVLIEPLYDSYLPIIRRAGGIPRLVRLEPPRWSLPREALAAAFSPRT
KLILVNSPMNPCAKVFSADEMAFIGDLAIAHDAYIVCDEVYEHLVFDGQSHRPLMAQPGLRERCVRIGSAGKTFSLTNWK
VGYVIAAPEVLDPIAKTHQYITFTTPIPLQQAVAEGLAKDDAYFAGLAHDMAARRDRLGAGLRRIGFEVLDCAGTYFLTA
DFRPLGFAGDDLAFCRHITCEAGVTAVPVSAFYQPGQGGIPTSFARFCFAKRDDALDEAVARLERHFAGGRRNA

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=397, Percent_Identity=34.0050377833753, Blast_Score=242, Evalue=5e-64,
Organism=Homo sapiens, GI56713256, Length=397, Percent_Identity=34.0050377833753, Blast_Score=241, Evalue=7e-64,
Organism=Homo sapiens, GI95147551, Length=397, Percent_Identity=33.7531486146096, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI169881279, Length=397, Percent_Identity=33.7531486146096, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI169881281, Length=394, Percent_Identity=29.6954314720812, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI4507369, Length=381, Percent_Identity=23.3595800524934, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1786816, Length=381, Percent_Identity=40.1574803149606, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI1788722, Length=362, Percent_Identity=25.6906077348066, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788627, Length=222, Percent_Identity=22.972972972973, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994476, Length=403, Percent_Identity=32.7543424317618, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI71994472, Length=403, Percent_Identity=32.7543424317618, Blast_Score=223, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17567369, Length=399, Percent_Identity=30.8270676691729, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17567663, Length=382, Percent_Identity=22.2513089005236, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=383, Percent_Identity=31.331592689295, Blast_Score=200, Evalue=3e-52,
Organism=Drosophila melanogaster, GI28573069, Length=406, Percent_Identity=33.0049261083744, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI24646114, Length=406, Percent_Identity=33.0049261083744, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI28573067, Length=406, Percent_Identity=33.0049261083744, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI28573065, Length=406, Percent_Identity=33.0049261083744, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI18859735, Length=380, Percent_Identity=24.2105263157895, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 42726; Mature: 42726

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAANSLFSGLGTTIFSVMSHLAQEYGAINLGQGFPEGLEPADVIAAAARSLAAGPHQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PMMGLPALRQALAAHEKRFYDLDIDWQTEVMVTSGATEALADALFGLIEPGDEVVLIEPL
CCCCCHHHHHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCC
YDSYLPIIRRAGGIPRLVRLEPPRWSLPREALAAAFSPRTKLILVNSPMNPCAKVFSADE
HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCC
MAFIGDLAIAHDAYIVCDEVYEHLVFDGQSHRPLMAQPGLRERCVRIGSAGKTFSLTNWK
HHHHHHHHHHCCHHEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCE
VGYVIAAPEVLDPIAKTHQYITFTTPIPLQQAVAEGLAKDDAYFAGLAHDMAARRDRLGA
EEEEEECHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLRRIGFEVLDCAGTYFLTADFRPLGFAGDDLAFCRHITCEAGVTAVPVSAFYQPGQGGI
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC
PTSFARFCFAKRDDALDEAVARLERHFAGGRRNA
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKAANSLFSGLGTTIFSVMSHLAQEYGAINLGQGFPEGLEPADVIAAAARSLAAGPHQYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PMMGLPALRQALAAHEKRFYDLDIDWQTEVMVTSGATEALADALFGLIEPGDEVVLIEPL
CCCCCHHHHHHHHHHHHHEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEECCC
YDSYLPIIRRAGGIPRLVRLEPPRWSLPREALAAAFSPRTKLILVNSPMNPCAKVFSADE
HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCC
MAFIGDLAIAHDAYIVCDEVYEHLVFDGQSHRPLMAQPGLRERCVRIGSAGKTFSLTNWK
HHHHHHHHHHCCHHEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCE
VGYVIAAPEVLDPIAKTHQYITFTTPIPLQQAVAEGLAKDDAYFAGLAHDMAARRDRLGA
EEEEEECHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLRRIGFEVLDCAGTYFLTADFRPLGFAGDDLAFCRHITCEAGVTAVPVSAFYQPGQGGI
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHCCCCCCCC
PTSFARFCFAKRDDALDEAVARLERHFAGGRRNA
CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]