Click here to switch to the map view.

The map label for this gene is cbpA [H]

Identifier: 83593350

GI number: 83593350

Start: 2330185

End: 2331186

Strand: Direct

Name: cbpA [H]

Synonym: Rru_A2015

Alternate gene names: 83593350

Gene position: 2330185-2331186 (Clockwise)

Preceding gene: 83593344

Following gene: 83593351

Centisome position: 53.53

GC content: 68.96

Gene sequence:

>1002_bases
GTGAGCAAGGATCCCTATCGCATTCTCGGCGTCGGCAAGGACGCCACCGCCGATGACATTCGCAAGGCCTACCGCAAACT
GGCCAAGGCCTCGCACCCCGACCTCCATCCCGGCGACCCGCAGGCCGCGGCCACTTTCCGCGAGCTGGCGGCCGCCCATG
ACATTCTTGGCGACAGCGCCAAGCGGGCGCGCTTCGATCGCGGCGAGATCGACGCCAGCGGCGCCGAACGCGCCCCCGAG
CGGCCCTCCTCCGCGCCAGGGGGGCCGGGTTCCGGCGCCTCGTCGCGCTATTATTACCGCGATTACGCCGATGCCGGGGC
CACCGGCGGCTATGGCACCACCGCCGGCTTTGAGGATTTCGAAGACCTCTCCGACCTGTTTTCCGCCGGCTTGGGACGCG
GGCGCAAGGGGCCGCGCCCGGGACGCGACCTGCGCTTTCACCTCACCCTCGATTTCCTCGACGCGGCGAATGGCCTGCGC
AAGCGCGTCACCCTGCCCGATGGGCCGGTGCTGGATCTGACCATCCCGCCCGGAACCCGCGACGGCGAGATCCTGCGCCT
GAAGGGCAAGGGAGCGCCGGGCCTGAACGGCGGCGAGGCCGGCGACGGTCTGGTCGAGATCAGCGTGCCCCCTCACCCCG
CCTTCCAGCGCGACGGCGACGATATCGTGATCGAGGTGCCGATCACTCTTGACGAGGCGGTGCTGGGCGGCAAAATCGAG
GTTCCAACCATCAGCGGCAAGGTGGCGATGACCCTGCCCCCCGGGACGACCAGCGGCGACGTGCTGCGCCTGCGCGGCAA
GGGCATTCATCCGGCCAATCGCCCGGCCGGCGATCAACGGGTGATCTTGAAAATCGCCCTGCCCCCGGCCATCGACGGCG
CCCTGGCGAACTTCCTTAGCCAATGGCGCAAGGATCACCCCTATGATCCCCGCGCCCCCCTCATGGCCCAAACAACCCCT
GCCGCCCATACGGCCCATGCGGGTCGGAGTAAGACATCATGA

Upstream 100 bases:

>100_bases
CGGGGACGCCGCCTTGACAGGCCGGTATCACCGCCCACATTGAACGACGAAGTCCCCGCATGGCGCGGTTGGCACGGATG
CAACCAACAAGGCCTCGGCC

Downstream 100 bases:

>100_bases
GATTAAGTGAACGCGACGTGGTGGCGAGCGTCGGCCAGCTTTCCCTAACCCACCTGCGCCTATGGGTCAGCGAGGGCTGG
GTCGCCCCCGCCCAGGGCGA

Product: chaperone DnaJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSKDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKRARFDRGEIDASGAERAPE
RPSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDFEDLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLR
KRVTLPDGPVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPITLDEAVLGGKIE
VPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALPPAIDGALANFLSQWRKDHPYDPRAPLMAQTTP
AAHTAHAGRSKTS

Sequences:

>Translated_333_residues
MSKDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKRARFDRGEIDASGAERAPE
RPSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDFEDLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLR
KRVTLPDGPVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPITLDEAVLGGKIE
VPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALPPAIDGALANFLSQWRKDHPYDPRAPLMAQTTP
AAHTAHAGRSKTS
>Mature_332_residues
SKDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKRARFDRGEIDASGAERAPER
PSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDFEDLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLRK
RVTLPDGPVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPITLDEAVLGGKIEV
PTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALPPAIDGALANFLSQWRKDHPYDPRAPLMAQTTPA
AHTAHAGRSKTS

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360838, Length=377, Percent_Identity=24.6684350132626, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI205360840, Length=377, Percent_Identity=24.6684350132626, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI201862587, Length=356, Percent_Identity=28.6516853932584, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI56549115, Length=356, Percent_Identity=28.6516853932584, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI6631085, Length=342, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI201862518, Length=356, Percent_Identity=28.6516853932584, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI39204547, Length=264, Percent_Identity=28.030303030303, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI5453690, Length=350, Percent_Identity=26.5714285714286, Blast_Score=82, Evalue=9e-16,
Organism=Homo sapiens, GI7706495, Length=64, Percent_Identity=53.125, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=51.6129032258064, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI88501736, Length=87, Percent_Identity=42.5287356321839, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787235, Length=318, Percent_Identity=31.4465408805031, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1786197, Length=136, Percent_Identity=36.0294117647059, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17534355, Length=335, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212645553, Length=65, Percent_Identity=50.7692307692308, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17553096, Length=134, Percent_Identity=31.3432835820896, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17553098, Length=134, Percent_Identity=31.3432835820896, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=89, Percent_Identity=41.5730337078652, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45552813, Length=355, Percent_Identity=26.1971830985915, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45549272, Length=355, Percent_Identity=26.1971830985915, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45552811, Length=354, Percent_Identity=25.9887005649718, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI85726398, Length=361, Percent_Identity=28.2548476454294, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI18858081, Length=357, Percent_Identity=27.7310924369748, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24658562, Length=339, Percent_Identity=28.6135693215339, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24658555, Length=339, Percent_Identity=28.6135693215339, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19920464, Length=65, Percent_Identity=44.6153846153846, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24668523, Length=62, Percent_Identity=51.6129032258064, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 35091; Mature: 34960

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSA
CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
KRARFDRGEIDASGAERAPERPSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH
EDLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLRKRVTLPDGPVLDLTIPPGTR
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHHCCHHEEEECCCCCEEEEEECCCCC
DGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPITLDEAVLGGKIE
CCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCEECHHHCCCEEE
VPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALPPAIDGALANFLS
ECEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
QWRKDHPYDPRAPLMAQTTPAAHTAHAGRSKTS
HHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
SKDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSA
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
KRARFDRGEIDASGAERAPERPSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHH
EDLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLRKRVTLPDGPVLDLTIPPGTR
HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEHHHHHCCHHEEEECCCCCEEEEEECCCCC
DGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPITLDEAVLGGKIE
CCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCEECHHHCCCEEE
VPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALPPAIDGALANFLS
ECEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHH
QWRKDHPYDPRAPLMAQTTPAAHTAHAGRSKTS
HHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA