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The map label for this gene is ydhJ [H]

Identifier: 83593289

GI number: 83593289

Start: 2263279

End: 2264181

Strand: Direct

Name: ydhJ [H]

Synonym: Rru_A1954

Alternate gene names: 83593289

Gene position: 2263279-2264181 (Clockwise)

Preceding gene: 83593288

Following gene: 83593290

Centisome position: 52.0

GC content: 67.55

Gene sequence:

>903_bases
ATGACCTTGAAGCCTGTTCTCTCCCTGCTCGGCCGCTATGCCCTGACGCTTTGCCTCGTCGCCGGCGCCACCCTCATCGC
GTGGGAAGCCTGGAGCCGCTCCGAGCGGACTCCCTGGACACGCGACGGGCGGGTGAGCGCCGATGTCGTGCGGATCGCCC
CGGAAGTCTCCGGCACCGTCAGCGCCGTACCCATTCGGGATAATCAATATGTCCATCGCGGGGACATTCTCTATGGGATC
GACCCCGAGCGGCTGCGGCTCGCGGTGGCGGTGGCGGAGGCCGACCTCGAAGCAAAGCGCCAGGATATGCTCGTTCGTCA
AGCGACGGCGCGGCGGCACGGTCAACTCCGCGATGTTGTATCACAAGAAGCCGTCCAGCAAGCGGGCGGAGCGGCGGCGG
TGGCCAGCGCCGCCTATCAGGCCGCGCTGGCCACCCTCGATCTGGCCAAACTCGACCTCGCCCGCGCGACCGTGCGCTCG
CCGGTCGATGGCTATGTGATCAATCTGCGGCTGCGGCCCGGCGACTACACGACAGCCGGCGTGACGACGGTCGCCGTCCT
CGACGCCGCCCGATTCTGGATCACCGGCTATTTTGAGGAGACCAAGATCGGACAAATCCGCGTCGGCAGTCCGGCGCGGA
TCAGGCTGATGGGCTTTGATCGGCCGGTGTCGGGCCATGTCGAAAGCATCGGTCACGGTATCGAGAACGGCAACGACGCG
CCCGGCCCTCTCGGCCTGCCCACTGTGGCGGCGACCTTTTCCTGGGTGCGTCTCGCCCAGCGCATCCCGGTCCGCATCCA
CGTCGATCAGGTGCCTCTTGATGTCGCACTGGCGGCAGGCATGACGGCGACCATCGAGATCATCCCGGCGGCCGGCGAGC
CGGCCGTGGGGAACCGGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCCTTACCCGCCTCTTCGTGTCGCGGCCGCTCGTCGAGATCGCCACCTTCGCCCTCATTTACGCTCTGCTCGTGCGG
CAGTTGTCATCGATCGGACT

Downstream 100 bases:

>100_bases
AAAACGCGCGTCCCTTCCTCTGCGTCCCCCCGCTCGCGACCGACCCGACGCCAAAGCCTCGGGAAAACGCCCATGCCGAT
TTTTGTTAAAAAAAGCCACC

Product: secretion protein HlyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTLKPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTVSAVPIRDNQYVHRGDILYGI
DPERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVVSQEAVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRS
PVDGYVINLRLRPGDYTTAGVTTVAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDA
PGPLGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEIIPAAGEPAVGNRR

Sequences:

>Translated_300_residues
MTLKPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTVSAVPIRDNQYVHRGDILYGI
DPERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVVSQEAVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRS
PVDGYVINLRLRPGDYTTAGVTTVAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDA
PGPLGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEIIPAAGEPAVGNRR
>Mature_299_residues
TLKPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTVSAVPIRDNQYVHRGDILYGID
PERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVVSQEAVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRSP
VDGYVINLRLRPGDYTTAGVTTVAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDAP
GPLGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEIIPAAGEPAVGNRR

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=288, Percent_Identity=37.5, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1789637, Length=286, Percent_Identity=38.1118881118881, Blast_Score=190, Evalue=8e-50,
Organism=Escherichia coli, GI1790519, Length=295, Percent_Identity=33.2203389830508, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788711, Length=316, Percent_Identity=25.9493670886076, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789041, Length=285, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 32147; Mature: 32016

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTV
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
SAVPIRDNQYVHRGDILYGIDPERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVV
EEEEECCCCEEEECCEEECCCHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SQEAVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRSPVDGYVINLRLRPGDYTTAG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
VTTVAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDA
HHHHHHHHHHHHEEEEEECCCCCCEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCCCC
PGPLGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEIIPAAGEPAVGNRR
CCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TLKPVLSLLGRYALTLCLVAGATLIAWEAWSRSERTPWTRDGRVSADVVRIAPEVSGTV
CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
SAVPIRDNQYVHRGDILYGIDPERLRLAVAVAEADLEAKRQDMLVRQATARRHGQLRDVV
EEEEECCCCEEEECCEEECCCHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SQEAVQQAGGAAAVASAAYQAALATLDLAKLDLARATVRSPVDGYVINLRLRPGDYTTAG
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
VTTVAVLDAARFWITGYFEETKIGQIRVGSPARIRLMGFDRPVSGHVESIGHGIENGNDA
HHHHHHHHHHHHEEEEEECCCCCCEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCCCC
PGPLGLPTVAATFSWVRLAQRIPVRIHVDQVPLDVALAAGMTATIEIIPAAGEPAVGNRR
CCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]