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The map label for this gene is ycbB [H]

Identifier: 83593271

GI number: 83593271

Start: 2242670

End: 2244469

Strand: Reverse

Name: ycbB [H]

Synonym: Rru_A1936

Alternate gene names: 83593271

Gene position: 2244469-2242670 (Counterclockwise)

Preceding gene: 83593272

Following gene: 83593270

Centisome position: 51.56

GC content: 67.22

Gene sequence:

>1800_bases
ATGACGATCGGCAGTTTTCCCGGTAAAGGCGTCCTCCGGGGCGCGACCTTCGGAGCGGTCCTTGGGCGTGGTGCTCTGAT
GGGTGTTTTCGCCGCCGCCCTTTTCGTGCCGGCCGTCCTCGCCTCGACCAGCCTGAACCCGCCAAGCGATCCTCTGGCCA
TCGGTCCGGGCACCCCGACCTATTCGCCCAGTTCCGCCACCCTGCCGCCTTTGGCCGCGCCGTCGGCGGCCGTTGCCCGC
CCGGGGCTGGCCGTGGCCGAGTCCAAAAACGATGCCGCCGCCCGTCTGGCCAAGACCTATCGTGACCACCACGGCGGCAA
GCCGCTGTGGATGAGCGGGGCGGCGGCCTCGCCGCGCGGGCTCGCCCTGATCGCCGCCCTGGAGGGCGCGTCCGAAGAGG
GGATCGACCGCGAGGCCTATCGCCTGGGCGAGATCAAGCGGCTGCTGGCGCGCACCACCCCCGCCGATGCCCAGACCGCC
GATCTGCTGATGGGCCGGGCATTTTTGCTTTTCGCCACCGATCGTCTGCTTGGGCAAAGCCGGCGCGCTCTGCCCTTTAG
CGAGCGTCTGGCCCTTCTCGCGCGCGAGGAGGGGGTGATCCCCGAGGATTTGCTGGCCAATGCCGGCGCCGCGCCCGACT
TCGGCCTGTTCCTGGCGACCCTGGCGCCGCCGACGCCCCAATACGACCTGTTGCGCCAGGGGCTAGTCCGCTATCAGGCT
TTGGCCCGCGACGGTGGTTGGCCGACCGATCTGGCCGATGGCGCCTCGATCAAGCCGGGCGATCGCGATCCGCGCCTGCC
CGAGATGCGGCGGCGTCTGGCGGCCGAGGGACTCGTCGTGGGAAGTGATCCGACCTTCATCGGCCCGCCGGACGCCGAGC
TGTTGGATGACTTCCTGGTCGAGGCGGTCCGCATCTTCCAGGCCGCTCACGGGCTGAGCGCCGATGGCGTGATCGGTCGC
GGTACGCTGGTCGACATGAACACCACCCCGGCCCAGCGCATCACCCAGATCCGCGTCGCCCTGGAACGTTGGCGGCTGTT
GCCGCGCGCCCTTGGCCAGACCCATCTGCTGGTCAATGTGCCCCAATATCAGCTTTATCTGAACGAGGGGCGGACGACGG
TCTTGTCGATGCGGGTGGCGGTCGGCCGCCAGGATTTCGAAACGCCGCTGTTTAGCGACACCCTGCGCTACATGGAATTC
AACCCCTATTGGAACGTGCCGATCTCGATCGCCCAGGCCGAGGTCATTCCCAAGCAGATCGAGAATTCGGCTTATCTGGC
CAAAAAGGGCTTCACCGTTCTGCCCCGTGGGGTCGAGGGCTGGGATGACGGCGTCGGTCATGAGTCGGTGGATTGGAAGG
CCGACGCGGCGCGCAGCTATCGCCTGCGCCAGGATCCCGGACCGGCCAATCCGCTGGGTACGGTGAAGTTCATGTTCCCC
AATGAATATGCGGTCTATCTCCACGACACCAACAGCCGGGGGGTCTTCGATCGCAGCGCCCGGGCGGTCAGCCATGGCTG
CGTGCGCGTGCAGGAACCGGCGCTGCTGGCCAATTACATCCTTGAACGCTTTACCGACCGGATCGGCAAGACGGCGGCGG
ATTTCTCCGGCCCAACCCCCAAGGTCGTCCGTCTCAATCGCCCGCTGCCCATCCATCTGGTCTATATCACCGCCTGGGGC
GGCGAGGGCGGCAAGGTGGCCTTCGTGCGCGATATCTATGCCAAGGATCGGGCGATCCGTCAGGCCTTGCACGATACCGC
CGCCTCGCCCGACGCCGACGCCACCCTGGCGGCGAAATAG

Upstream 100 bases:

>100_bases
CTTTGTACGGAGGGTGCGGGAACGCCTTGGTCAGCCCGCGCGTTACCCCAAAAATACGCGTGAACCCGTTGACAATGATG
GTTTTTCGGAGTTGTGGCCT

Downstream 100 bases:

>100_bases
ACGGCGACATAGGGGAGGGACCGGCGGCGGGATGGCCCGCCGGCCCCCTGACGGTGATTCCACGGAAGGTTGTTATTCTC
GGGCTTTGCCGACTTGTTAG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 598

Protein sequence:

>599_residues
MTIGSFPGKGVLRGATFGAVLGRGALMGVFAAALFVPAVLASTSLNPPSDPLAIGPGTPTYSPSSATLPPLAAPSAAVAR
PGLAVAESKNDAAARLAKTYRDHHGGKPLWMSGAAASPRGLALIAALEGASEEGIDREAYRLGEIKRLLARTTPADAQTA
DLLMGRAFLLFATDRLLGQSRRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQA
LARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLVEAVRIFQAAHGLSADGVIGR
GTLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNVPQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEF
NPYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFP
NEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAWG
GEGGKVAFVRDIYAKDRAIRQALHDTAASPDADATLAAK

Sequences:

>Translated_599_residues
MTIGSFPGKGVLRGATFGAVLGRGALMGVFAAALFVPAVLASTSLNPPSDPLAIGPGTPTYSPSSATLPPLAAPSAAVAR
PGLAVAESKNDAAARLAKTYRDHHGGKPLWMSGAAASPRGLALIAALEGASEEGIDREAYRLGEIKRLLARTTPADAQTA
DLLMGRAFLLFATDRLLGQSRRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQA
LARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLVEAVRIFQAAHGLSADGVIGR
GTLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNVPQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEF
NPYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFP
NEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAWG
GEGGKVAFVRDIYAKDRAIRQALHDTAASPDADATLAAK
>Mature_598_residues
TIGSFPGKGVLRGATFGAVLGRGALMGVFAAALFVPAVLASTSLNPPSDPLAIGPGTPTYSPSSATLPPLAAPSAAVARP
GLAVAESKNDAAARLAKTYRDHHGGKPLWMSGAAASPRGLALIAALEGASEEGIDREAYRLGEIKRLLARTTPADAQTAD
LLMGRAFLLFATDRLLGQSRRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQAL
ARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLVEAVRIFQAAHGLSADGVIGRG
TLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNVPQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEFN
PYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFPN
EYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAWGG
EGGKVAFVRDIYAKDRAIRQALHDTAASPDADATLAAK

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=468, Percent_Identity=32.4786324786325, Blast_Score=204, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64425; Mature: 64294

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGSFPGKGVLRGATFGAVLGRGALMGVFAAALFVPAVLASTSLNPPSDPLAIGPGTPT
CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
YSPSSATLPPLAAPSAAVARPGLAVAESKNDAAARLAKTYRDHHGGKPLWMSGAAASPRG
CCCCCCCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
LALIAALEGASEEGIDREAYRLGEIKRLLARTTPADAQTADLLMGRAFLLFATDRLLGQS
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEHHHHHHHCCC
RRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQA
CCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
LARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLV
HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
EAVRIFQAAHGLSADGVIGRGTLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNV
HHHHHHHHHCCCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
PQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEFNPYWNVPISIAQAEVIPKQI
CCEEEEEECCCEEEEEEHHHHCCCCCCCCHHHHHHHHEEECCCCCCCEEHHHHHHHHHHH
ENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFP
CCCEEEHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEC
NEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTP
CCEEEEEECCCCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCHHHCCCCCC
KVVRLNRPLPIHLVYITAWGGEGGKVAFVRDIYAKDRAIRQALHDTAASPDADATLAAK
CEEEECCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
>Mature Secondary Structure 
TIGSFPGKGVLRGATFGAVLGRGALMGVFAAALFVPAVLASTSLNPPSDPLAIGPGTPT
CCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
YSPSSATLPPLAAPSAAVARPGLAVAESKNDAAARLAKTYRDHHGGKPLWMSGAAASPRG
CCCCCCCCCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
LALIAALEGASEEGIDREAYRLGEIKRLLARTTPADAQTADLLMGRAFLLFATDRLLGQS
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEHHHHHHHCCC
RRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQA
CCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
LARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLV
HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHH
EAVRIFQAAHGLSADGVIGRGTLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNV
HHHHHHHHHCCCCCCCEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
PQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEFNPYWNVPISIAQAEVIPKQI
CCEEEEEECCCEEEEEEHHHHCCCCCCCCHHHHHHHHEEECCCCCCCEEHHHHHHHHHHH
ENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFP
CCCEEEHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEC
NEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTP
CCEEEEEECCCCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCHHHCCCCCC
KVVRLNRPLPIHLVYITAWGGEGGKVAFVRDIYAKDRAIRQALHDTAASPDADATLAAK
CEEEECCCCEEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]