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The map label for this gene is nusB

Identifier: 83593156

GI number: 83593156

Start: 2120743

End: 2121300

Strand: Reverse

Name: nusB

Synonym: Rru_A1821

Alternate gene names: 83593156

Gene position: 2121300-2120743 (Counterclockwise)

Preceding gene: 83593157

Following gene: 83593155

Centisome position: 48.73

GC content: 68.1

Gene sequence:

>558_bases
ATGGCCCTGCAGGACGATAAGCCGGGCTCTGCCCCGAAAGAGCGCAGCGGTCGTCAGATCCGCAGCAGCGCCGCCCGACT
GGCGGCGGTCCAGGCGCTTTATGTGCTTGATCTGGCCGAGGACGCCCGCGTCGATCAGGTGGTGCTTGATTTCATGAGCG
GGTCGATGGGCGGCATGGCCATCGTCGAGGTCGCCGATCCCGAGGGCATCTTCGATCCCACCGAAGAGATCGCCGCCCTG
GAACCCCCCGATGGCGAGTTGTTCGCCATGCTGGTGCGCGGCGCCCATGCCGAACTGGCCCGCCTTGACGAGGTGATCGG
CGCCAGCCTGTCGGCCGATTGGCCCTGGGACCGCCTAGAGCCGGTGGTCCGCGCCGTGTTGCGCGCGGGGGTTTATGAAT
TGCTCGAACGCCAGCGCACGCCGCCGCGCGTGGCGATCAAGGAATACGTCGATATCGCCGCCGCTTTTTATTCGGGGGCC
GAACCGGGGATGGTGAACGCCGTGCTCGACCGCGTCGCCCGTTCGGCGCGGCCCGAGGCCTTCGGCGGCGGAGTCTGA

Upstream 100 bases:

>100_bases
AGGGCCTGTCTGCGCATGCTCGACGTCAAGCGCGAGATGGGGTTATAAGCCTGCCCCCGCCGTCCGGCGGGCGTGGTTTG
CCGAGATGGAGGACAAGGGC

Downstream 100 bases:

>100_bases
CCCGGCCATGGCGCGGCGGGGCGAATTCGCGCTGATCGGCGAGGTTTTCGCTCCGCTCGCCGCAAGCTGTCCCGCCGCGC
TTGGCCTGGGCGACGATGCC

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAAL
EPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGA
EPGMVNAVLDRVARSARPEAFGGGV

Sequences:

>Translated_185_residues
MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAAL
EPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGA
EPGMVNAVLDRVARSARPEAFGGGV
>Mature_184_residues
ALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALE
PPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAE
PGMVNAVLDRVARSARPEAFGGGV

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_RHORT (Q2RTC4)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426908.1
- ProteinModelPortal:   Q2RTC4
- SMR:   Q2RTC4
- STRING:   Q2RTC4
- GeneID:   3835245
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1821
- NMPDR:   fig|1085.1.peg.2396
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- BioCyc:   RRUB269796:RRU_A1821-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 19845; Mature: 19714

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLE
EEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHH
PVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPEA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
FGGGV
CCCCC
>Mature Secondary Structure 
ALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLE
EEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHH
PVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPEA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
FGGGV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA