| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is 83593152
Identifier: 83593152
GI number: 83593152
Start: 2113845
End: 2116682
Strand: Reverse
Name: 83593152
Synonym: Rru_A1817
Alternate gene names: NA
Gene position: 2116682-2113845 (Counterclockwise)
Preceding gene: 83593153
Following gene: 83593149
Centisome position: 48.63
GC content: 55.21
Gene sequence:
>2838_bases ATGGCGCGTCTTCATCCTATCTATTCCGGTCAGTCCGACAGGCCTGCCATTCTGTTCGTTCACGGACTTGATGGCCATTG GCTTGAAACCTGGCGCCATGACGCCTGCTCCAAGGACGACTGCTGGCCCCATTGGGTAGGGGAAGAGACCGGATGCGACA TCTGGAGCTTGGAGTACGATGCCGCGCTTTCTGGCTGGTTGGATCAGGCCATGCCCCTCCCCGACCAAGGTTCACAGGTT ATGGACCTTTTGGCGAGTGCTCCGGCCCTGAAAGGCAAACCCCTTGTGTTCGTAACCCACAGTTTGGGGGGGATTTTGGT CAAAACGGCGCTAGTCTATGGGGCCGAAGAAGATAGAAGATTTCAGCATATCGTTGATCACGTCCTCGGCGTTGTTTTTA TTGCGACGCCTCATTCCGGGGCCCAGCTCGCCACGCTGGCAAGAGTGATAAAATACCTTCTCAGAATAAATCCGCCAGTT GGCAACCTTGAGCACCACGATCCACACCTGAGGACACTGAACCGACGATATCAGACTCTGGTCAAGGAGCGAGGAATCGA GGGATACGTTTACGCCGAGAAACGGGGTGTGAAGATTGGCCCCCGGGGTTTTGGTGGCTGGCTGCGGCGCATTGAGCCGA CGGTGATGGTGGTCGATCCGGGCAGTACAGATCCCAGCCTTCCCGAAATCCAACCCATCAGTCTTGCGGAAGATCATATC AGTATTTGTAAGCCGCCCGACCGGCAACAGCAGATCCATTTGTCTTTGTGCCACGTCTTAAAGGAAAAGATCATCCCCCT CGCCGGCGATCGTGGGATGGGGACGACAGGGGTGGGGTTGAAGCTCCTGGAGTCCGGTACCGCCCAGGAAAACCCAGCGG CTCACATGCCACCAGGGCGGCTTGTTGGTCCAGATGATAACCGGCTATCCCCGCGCGAGGGCAAGGTGTATGGCCGTAAA ACCCAAGAAAACGACGTTCTGGCCTTTCTGAAGGGGAGCGAGCCGGTCAAAGTCGTGGGCGGGGTCGCAGGCGTAGGGAA AACCGAGGTTTGTAAGGCCGCCCTCAAAACTTGGCTGCACACCAGTCCCCGTCCCGTGGCCTATTACGTGCGTGTTCCCG ATCGCGCCCGCTCGGCGGACTTGGTGCTCCAGGTGGGGAAGGCTGTCGGGATTGAAAATTGTGAAAGTCTCGCGCAACTT CTTGGCGTGATCCCTGTGGGATTGTACTACCTGGATAATCTGGAAAGCGTTGCCGACGACCAAGAAGGCCGGAATGCCCT GCGTGATTTGGCCCAAAAACCGGGTGTTCGGATACTGGCTTCATCACGGACTCGTCTCGATACTATTTTTGGAGCTCCTA TCGAGATCAAATGTCTATCGGCTCCCGATGCTTTGGCGCTGTTTCGGGATTTGTGGCCCCCCACCCAGACGCTTCCGAAG GATGACGAGTTGCAAGCCTTCGTGATCGGTAAACTAGGGGGGCATGCCCTCAGCCTTGTTCTGGTGGCTCGTTTGGGGAT GTGCCTTTCCTTTGATGCCCTGCGCCGCCGCTGGGACGAAGAAGGGGCCGCGCTGGCCTGCGATGGGGTTGAGGATGATA CACGCACCAGCAACTTAACGTTCAACCTACGGCTGACGGCCGAGGTCCTGGCCCCCACACCAGGCGCCTTGTCCGTCTGG GTCCTAATGGCTTTATTCGAAGAAGGGATTCCTGAAGCGGTATTGGAAGAGGTGGAGCGGCGCGGACAATGGCCCACCTT GGCGCGACACCGCCTTGCTGTGCACCACTTGATTTCCAAAAGGGGAGACCGGTGGTTTCTTCCCCCTCCCGTGGCTCGCT ATGCTCGATATGCCGCGGTTACCGAACAAGATGGCTTTTGCTGGCGGAAAAGCCGACAGCCGATCCTGGACTTGTTTTTG GTTTTTGCCGAAAAAGCCTCTTCTTTTGACTCAAGTCCAGAAACATTAAAAGCAAAGAAATGGATTCTAGAATTTTTCAA TACAATTTCTATTGTAATTGAGTGTGAATTAGAATCCAATGTTCAGAACAAATTTTGGCTTAACCGTATGAGTTATTTTC TTCGCGATATTTACCAGCAGCGGATCGCTGTGAGCCCCGCCTTGCTGAGAAAACTGGCCGATGCAGGAATCCAGCCGGCC AACACGCTCCGGAGTCTCGGCGATCTGGCAAGCCGGTTGGGGCAGGTGGACAAGGCGCGATCTTTGTATGAAAAGGCGCT CGGGCTTTCCCAACAGGAGCAATCAGGTCTTGGTCAGGCCAACGCGCTAAAGGCCCTCGGCGATCTGGCAAGCCGGTTGG GGCAGGTGGACAAGGCGCGATCCTTGTATGAAACGGCGCTCGGGCTTTTCCAACAGGAGCAACATGGTCTTGGTCAGGCC AACACGCTTCACGGCCTCGGTGATCTGGCAAGCCAGTTGGGGCAGGTGGACAAAGCGCGATCCTTGTATGAAAAGGCGCT CGGGCTTTTCCAGCAGGAGCCAAATGGTCTTGGTCAGGCCAACACGCTGAAGAGCCTCGGCGCTCTGGAATATCGGTTGG GGCAGGTGGACAAGGCGCGATCTTTGTATGAAAAGGCGGTCGATCTCTATCGAATTGAACAAGAGCCACTAGGGCTTGCC TATTCTCTTACGAATCTTGCTCTATGCTTTGAGGTTCTGAAAAACCTTTCCAAGCGCAACCAAGTATTAAAAGCTGCCTT TGTAGCTAGTCGTGATGCCAACAATGAGATAGTTCAAATCTATCTGAAGGAGGCCATCCCGGAAATGCCCGGGGCAGATG TTCTATATGATTCGTGGTTAAAGGGGCAGTCTCGGTAA
Upstream 100 bases:
>100_bases TGTCCGCGCGCTTCGATTGGCCTCGTCTGTTACCCGTTTTTTGGGAATATCGGCTGGGGGCCTAGCCGTCCAGAAACCAT GAGATTAGGGGATCTCGGGA
Downstream 100 bases:
>100_bases TTGCTCAATTGGTTGTGACGCACGAAGTAAAACGCGACAAGTGAGTCGCCCCTATGCCGATCCGCCCCCCTCGAAGCGCC CCCTCAGATCCTAACCTTGA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Protein; SEFIR Domain Protein; NB-ARC Domain Protein; TIR Protein; WD-40 Repeat Protein; Nb-Arc; Regulatory Protein AfsR
Number of amino acids: Translated: 945; Mature: 944
Protein sequence:
>945_residues MARLHPIYSGQSDRPAILFVHGLDGHWLETWRHDACSKDDCWPHWVGEETGCDIWSLEYDAALSGWLDQAMPLPDQGSQV MDLLASAPALKGKPLVFVTHSLGGILVKTALVYGAEEDRRFQHIVDHVLGVVFIATPHSGAQLATLARVIKYLLRINPPV GNLEHHDPHLRTLNRRYQTLVKERGIEGYVYAEKRGVKIGPRGFGGWLRRIEPTVMVVDPGSTDPSLPEIQPISLAEDHI SICKPPDRQQQIHLSLCHVLKEKIIPLAGDRGMGTTGVGLKLLESGTAQENPAAHMPPGRLVGPDDNRLSPREGKVYGRK TQENDVLAFLKGSEPVKVVGGVAGVGKTEVCKAALKTWLHTSPRPVAYYVRVPDRARSADLVLQVGKAVGIENCESLAQL LGVIPVGLYYLDNLESVADDQEGRNALRDLAQKPGVRILASSRTRLDTIFGAPIEIKCLSAPDALALFRDLWPPTQTLPK DDELQAFVIGKLGGHALSLVLVARLGMCLSFDALRRRWDEEGAALACDGVEDDTRTSNLTFNLRLTAEVLAPTPGALSVW VLMALFEEGIPEAVLEEVERRGQWPTLARHRLAVHHLISKRGDRWFLPPPVARYARYAAVTEQDGFCWRKSRQPILDLFL VFAEKASSFDSSPETLKAKKWILEFFNTISIVIECELESNVQNKFWLNRMSYFLRDIYQQRIAVSPALLRKLADAGIQPA NTLRSLGDLASRLGQVDKARSLYEKALGLSQQEQSGLGQANALKALGDLASRLGQVDKARSLYETALGLFQQEQHGLGQA NTLHGLGDLASQLGQVDKARSLYEKALGLFQQEPNGLGQANTLKSLGALEYRLGQVDKARSLYEKAVDLYRIEQEPLGLA YSLTNLALCFEVLKNLSKRNQVLKAAFVASRDANNEIVQIYLKEAIPEMPGADVLYDSWLKGQSR
Sequences:
>Translated_945_residues MARLHPIYSGQSDRPAILFVHGLDGHWLETWRHDACSKDDCWPHWVGEETGCDIWSLEYDAALSGWLDQAMPLPDQGSQV MDLLASAPALKGKPLVFVTHSLGGILVKTALVYGAEEDRRFQHIVDHVLGVVFIATPHSGAQLATLARVIKYLLRINPPV GNLEHHDPHLRTLNRRYQTLVKERGIEGYVYAEKRGVKIGPRGFGGWLRRIEPTVMVVDPGSTDPSLPEIQPISLAEDHI SICKPPDRQQQIHLSLCHVLKEKIIPLAGDRGMGTTGVGLKLLESGTAQENPAAHMPPGRLVGPDDNRLSPREGKVYGRK TQENDVLAFLKGSEPVKVVGGVAGVGKTEVCKAALKTWLHTSPRPVAYYVRVPDRARSADLVLQVGKAVGIENCESLAQL LGVIPVGLYYLDNLESVADDQEGRNALRDLAQKPGVRILASSRTRLDTIFGAPIEIKCLSAPDALALFRDLWPPTQTLPK DDELQAFVIGKLGGHALSLVLVARLGMCLSFDALRRRWDEEGAALACDGVEDDTRTSNLTFNLRLTAEVLAPTPGALSVW VLMALFEEGIPEAVLEEVERRGQWPTLARHRLAVHHLISKRGDRWFLPPPVARYARYAAVTEQDGFCWRKSRQPILDLFL VFAEKASSFDSSPETLKAKKWILEFFNTISIVIECELESNVQNKFWLNRMSYFLRDIYQQRIAVSPALLRKLADAGIQPA NTLRSLGDLASRLGQVDKARSLYEKALGLSQQEQSGLGQANALKALGDLASRLGQVDKARSLYETALGLFQQEQHGLGQA NTLHGLGDLASQLGQVDKARSLYEKALGLFQQEPNGLGQANTLKSLGALEYRLGQVDKARSLYEKAVDLYRIEQEPLGLA YSLTNLALCFEVLKNLSKRNQVLKAAFVASRDANNEIVQIYLKEAIPEMPGADVLYDSWLKGQSR >Mature_944_residues ARLHPIYSGQSDRPAILFVHGLDGHWLETWRHDACSKDDCWPHWVGEETGCDIWSLEYDAALSGWLDQAMPLPDQGSQVM DLLASAPALKGKPLVFVTHSLGGILVKTALVYGAEEDRRFQHIVDHVLGVVFIATPHSGAQLATLARVIKYLLRINPPVG NLEHHDPHLRTLNRRYQTLVKERGIEGYVYAEKRGVKIGPRGFGGWLRRIEPTVMVVDPGSTDPSLPEIQPISLAEDHIS ICKPPDRQQQIHLSLCHVLKEKIIPLAGDRGMGTTGVGLKLLESGTAQENPAAHMPPGRLVGPDDNRLSPREGKVYGRKT QENDVLAFLKGSEPVKVVGGVAGVGKTEVCKAALKTWLHTSPRPVAYYVRVPDRARSADLVLQVGKAVGIENCESLAQLL GVIPVGLYYLDNLESVADDQEGRNALRDLAQKPGVRILASSRTRLDTIFGAPIEIKCLSAPDALALFRDLWPPTQTLPKD DELQAFVIGKLGGHALSLVLVARLGMCLSFDALRRRWDEEGAALACDGVEDDTRTSNLTFNLRLTAEVLAPTPGALSVWV LMALFEEGIPEAVLEEVERRGQWPTLARHRLAVHHLISKRGDRWFLPPPVARYARYAAVTEQDGFCWRKSRQPILDLFLV FAEKASSFDSSPETLKAKKWILEFFNTISIVIECELESNVQNKFWLNRMSYFLRDIYQQRIAVSPALLRKLADAGIQPAN TLRSLGDLASRLGQVDKARSLYEKALGLSQQEQSGLGQANALKALGDLASRLGQVDKARSLYETALGLFQQEQHGLGQAN TLHGLGDLASQLGQVDKARSLYEKALGLFQQEPNGLGQANTLKSLGALEYRLGQVDKARSLYEKAVDLYRIEQEPLGLAY SLTNLALCFEVLKNLSKRNQVLKAAFVASRDANNEIVQIYLKEAIPEMPGADVLYDSWLKGQSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI228008407, Length=280, Percent_Identity=26.4285714285714, Blast_Score=98, Evalue=4e-20, Organism=Homo sapiens, GI34304360, Length=171, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-11, Organism=Drosophila melanogaster, GI20129595, Length=249, Percent_Identity=23.2931726907631, Blast_Score=77, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104387; Mature: 104256
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLHPIYSGQSDRPAILFVHGLDGHWLETWRHDACSKDDCWPHWVGEETGCDIWSLEYD CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHH AALSGWLDQAMPLPDQGSQVMDLLASAPALKGKPLVFVTHSLGGILVKTALVYGAEEDRR HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHH FQHIVDHVLGVVFIATPHSGAQLATLARVIKYLLRINPPVGNLEHHDPHLRTLNRRYQTL HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VKERGIEGYVYAEKRGVKIGPRGFGGWLRRIEPTVMVVDPGSTDPSLPEIQPISLAEDHI HHHCCCCEEEEEECCCCEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHH SICKPPDRQQQIHLSLCHVLKEKIIPLAGDRGMGTTGVGLKLLESGTAQENPAAHMPPGR HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC LVGPDDNRLSPREGKVYGRKTQENDVLAFLKGSEPVKVVGGVAGVGKTEVCKAALKTWLH CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHC TSPRPVAYYVRVPDRARSADLVLQVGKAVGIENCESLAQLLGVIPVGLYYLDNLESVADD CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QEGRNALRDLAQKPGVRILASSRTRLDTIFGAPIEIKCLSAPDALALFRDLWPPTQTLPK HHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCC DDELQAFVIGKLGGHALSLVLVARLGMCLSFDALRRRWDEEGAALACDGVEDDTRTSNLT CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEE FNLRLTAEVLAPTPGALSVWVLMALFEEGIPEAVLEEVERRGQWPTLARHRLAVHHLISK EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC RGDRWFLPPPVARYARYAAVTEQDGFCWRKSRQPILDLFLVFAEKASSFDSSPETLKAKK CCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH WILEFFNTISIVIECELESNVQNKFWLNRMSYFLRDIYQQRIAVSPALLRKLADAGIQPA HHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCH NTLRSLGDLASRLGQVDKARSLYEKALGLSQQEQSGLGQANALKALGDLASRLGQVDKAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH SLYETALGLFQQEQHGLGQANTLHGLGDLASQLGQVDKARSLYEKALGLFQQEPNGLGQA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH NTLKSLGALEYRLGQVDKARSLYEKAVDLYRIEQEPLGLAYSLTNLALCFEVLKNLSKRN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH QVLKAAFVASRDANNEIVQIYLKEAIPEMPGADVLYDSWLKGQSR HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC >Mature Secondary Structure ARLHPIYSGQSDRPAILFVHGLDGHWLETWRHDACSKDDCWPHWVGEETGCDIWSLEYD CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHH AALSGWLDQAMPLPDQGSQVMDLLASAPALKGKPLVFVTHSLGGILVKTALVYGAEEDRR HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHH FQHIVDHVLGVVFIATPHSGAQLATLARVIKYLLRINPPVGNLEHHDPHLRTLNRRYQTL HHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VKERGIEGYVYAEKRGVKIGPRGFGGWLRRIEPTVMVVDPGSTDPSLPEIQPISLAEDHI HHHCCCCEEEEEECCCCEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHH SICKPPDRQQQIHLSLCHVLKEKIIPLAGDRGMGTTGVGLKLLESGTAQENPAAHMPPGR HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC LVGPDDNRLSPREGKVYGRKTQENDVLAFLKGSEPVKVVGGVAGVGKTEVCKAALKTWLH CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHC TSPRPVAYYVRVPDRARSADLVLQVGKAVGIENCESLAQLLGVIPVGLYYLDNLESVADD CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QEGRNALRDLAQKPGVRILASSRTRLDTIFGAPIEIKCLSAPDALALFRDLWPPTQTLPK HHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCC DDELQAFVIGKLGGHALSLVLVARLGMCLSFDALRRRWDEEGAALACDGVEDDTRTSNLT CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEE FNLRLTAEVLAPTPGALSVWVLMALFEEGIPEAVLEEVERRGQWPTLARHRLAVHHLISK EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC RGDRWFLPPPVARYARYAAVTEQDGFCWRKSRQPILDLFLVFAEKASSFDSSPETLKAKK CCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH WILEFFNTISIVIECELESNVQNKFWLNRMSYFLRDIYQQRIAVSPALLRKLADAGIQPA HHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCH NTLRSLGDLASRLGQVDKARSLYEKALGLSQQEQSGLGQANALKALGDLASRLGQVDKAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH SLYETALGLFQQEQHGLGQANTLHGLGDLASQLGQVDKARSLYEKALGLFQQEPNGLGQA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH NTLKSLGALEYRLGQVDKARSLYEKAVDLYRIEQEPLGLAYSLTNLALCFEVLKNLSKRN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH QVLKAAFVASRDANNEIVQIYLKEAIPEMPGADVLYDSWLKGQSR HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA