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The map label for this gene is lppB [H]

Identifier: 83593102

GI number: 83593102

Start: 2059422

End: 2060819

Strand: Reverse

Name: lppB [H]

Synonym: Rru_A1767

Alternate gene names: 83593102

Gene position: 2060819-2059422 (Counterclockwise)

Preceding gene: 83593103

Following gene: 83593100

Centisome position: 47.34

GC content: 70.74

Gene sequence:

>1398_bases
ATGAGCGCCCCCTTACCACCTCTGATGCCCTGGCGCCCCATTGTGGGGGCGGACCAGCACCCCTATAGTGGGGCCATGAC
CTCGTCCGCGCAGAATATATCCCGGCCAAGCCCCCGTCTCCCATCCGTTCGGGCGGCGGCGCTTACGGTCGCCCTAGGAT
TGGCCGTCGCGTCCTGCGGCGGCGGGTCCTCCGATTTCGGCCCCACCCCCGATAGCGAGCGCCAAGCGCGCTCCTATACG
GTGGCCCAGGGCGATACGGTGTATGCGGTGTCGCGCCGCTTCGGCATTCCGGTGCCGGCGATCATCAAGGAAAACGCCCT
GTCGCCGCCGTTCATCTTGCATATCGGTCAGGTGCTGCGGCTGCCCGGCCAGAAGATCCATACGGTGGCGCGCGGCGATA
CCCTGTATTCCATCGCCAAGCGCTATTCGATCGACATGAACCGGCTGGCCCGGCTCAACGCCATCGACGATACCAATCTG
ATCAAGGTCGGTCAGGCGCTGAGCATCCCCGGCGAAGAGGCGCCGCCAAGCGACGGCGACGAGGCCTTGGCCGCCACCTC
GATCCCCGTCGCCCGCGAATCCCTGCCGCCGCCCTCGGCTTATCCCGGGGCGGCGGCCTATCCGGGTACGGCCGCCTATC
CGGGAAGCCAGACCGCCCAGGCCGCGCCACCGGCCAGTCCCCATGCCGCGCCCACCAGCGTCTGGGTGGCGCCCGGCGGT
CCCGCCGCCGCCCCGTCCCCCGCGACCCAGGCTCCGGCGGGCTCACCGTCGCCCGCACAGGGCGCAAACGGGGCCTCGCC
CGCCCAGGGCGTAACCGGGTCCTCGCCCGCCCAGGGCGCGACCGCCTCGTCGCCGGCTCAAGGCGCGACCGGAGTCTTGC
GGCCGCCGCCATCGGCCGCGCCACCGCTCACCACCCAGCCGGCGCCGCCGATGGCCGCCCCGGCTCCGGTCAGCCCGACT
CCGGCCACCGCCCACGGCCCGGTTCCAACGCCGCCCGAACGCTCGGGCGCCTTCGCCTGGCCGGTGCGCGGAACGGTGCT
GTCGGGATTTGGCGCGACGCCCAAGGGCCAGCATAACGACGGCATCAATATCGCCGCCCCCCGGGGCACGCCGGTCACCG
CCGCCGAAACCGGCGTCGTCGCCTATGCCGGCAATGAAATCAGGGGCTTTGGCAATCTTCTGTTGATCAAGCACGAGGGC
GGTTTCATGACCGCCTATGCCCATAACGACGCGCTGCTGGTCAAGCGCGGCGAAACCGTCAGCCGGGGCCAGACCATCGC
CCGCGTCGGGTCCTCGGGCGGGGTCGGCGCGCCGCAGATCCATTTCGAGATCCGCCGCAACGGCAAGCCCATCGATCCCA
CCCCCTATCTTACCGGCCAGAAAGTGGCGAGCCGGTAA

Upstream 100 bases:

>100_bases
TGCGCCGCACCGCCGAGGACGCCCTGGTGACCGAACGCCTGTTCCCCGTGCGCTTCGTTCCGCTGGTCGATGGCCTGCCG
CCGCGCGACGCGCCCGGGGC

Downstream 100 bases:

>100_bases
GATGGGGGTGGACTGTCCTACTCCAGGGTCTTGCCCAGGCGGCCGGCGAGATCCTGGATGAACTGCCAGGCGGTGCGGCC
CGAGCGGCTGCCGCGCGCCA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSAPLPPLMPWRPIVGADQHPYSGAMTSSAQNISRPSPRLPSVRAAALTVALGLAVASCGGGSSDFGPTPDSERQARSYT
VAQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIGQVLRLPGQKIHTVARGDTLYSIAKRYSIDMNRLARLNAIDDTNL
IKVGQALSIPGEEAPPSDGDEALAATSIPVARESLPPPSAYPGAAAYPGTAAYPGSQTAQAAPPASPHAAPTSVWVAPGG
PAAAPSPATQAPAGSPSPAQGANGASPAQGVTGSSPAQGATASSPAQGATGVLRPPPSAAPPLTTQPAPPMAAPAPVSPT
PATAHGPVPTPPERSGAFAWPVRGTVLSGFGATPKGQHNDGINIAAPRGTPVTAAETGVVAYAGNEIRGFGNLLLIKHEG
GFMTAYAHNDALLVKRGETVSRGQTIARVGSSGGVGAPQIHFEIRRNGKPIDPTPYLTGQKVASR

Sequences:

>Translated_465_residues
MSAPLPPLMPWRPIVGADQHPYSGAMTSSAQNISRPSPRLPSVRAAALTVALGLAVASCGGGSSDFGPTPDSERQARSYT
VAQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIGQVLRLPGQKIHTVARGDTLYSIAKRYSIDMNRLARLNAIDDTNL
IKVGQALSIPGEEAPPSDGDEALAATSIPVARESLPPPSAYPGAAAYPGTAAYPGSQTAQAAPPASPHAAPTSVWVAPGG
PAAAPSPATQAPAGSPSPAQGANGASPAQGVTGSSPAQGATASSPAQGATGVLRPPPSAAPPLTTQPAPPMAAPAPVSPT
PATAHGPVPTPPERSGAFAWPVRGTVLSGFGATPKGQHNDGINIAAPRGTPVTAAETGVVAYAGNEIRGFGNLLLIKHEG
GFMTAYAHNDALLVKRGETVSRGQTIARVGSSGGVGAPQIHFEIRRNGKPIDPTPYLTGQKVASR
>Mature_464_residues
SAPLPPLMPWRPIVGADQHPYSGAMTSSAQNISRPSPRLPSVRAAALTVALGLAVASCGGGSSDFGPTPDSERQARSYTV
AQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIGQVLRLPGQKIHTVARGDTLYSIAKRYSIDMNRLARLNAIDDTNLI
KVGQALSIPGEEAPPSDGDEALAATSIPVARESLPPPSAYPGAAAYPGTAAYPGSQTAQAAPPASPHAAPTSVWVAPGGP
AAAPSPATQAPAGSPSPAQGANGASPAQGVTGSSPAQGATASSPAQGATGVLRPPPSAAPPLTTQPAPPMAAPAPVSPTP
ATAHGPVPTPPERSGAFAWPVRGTVLSGFGATPKGQHNDGINIAAPRGTPVTAAETGVVAYAGNEIRGFGNLLLIKHEGG
FMTAYAHNDALLVKRGETVSRGQTIARVGSSGGVGAPQIHFEIRRNGKPIDPTPYLTGQKVASR

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=153, Percent_Identity=41.1764705882353, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=45.8333333333333, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082297, Length=125, Percent_Identity=42.4, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 46876; Mature: 46745

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLPPLMPWRPIVGADQHPYSGAMTSSAQNISRPSPRLPSVRAAALTVALGLAVASCG
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
GGSSDFGPTPDSERQARSYTVAQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIGQVLR
CCCCCCCCCCCCHHHHHEEEEECCCEEEEEHHHCCCCCCHHHHHCCCCCHHHHHHHHHHH
LPGQKIHTVARGDTLYSIAKRYSIDMNRLARLNAIDDTNLIKVGQALSIPGEEAPPSDGD
CCCHHEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCC
EALAATSIPVARESLPPPSAYPGAAAYPGTAAYPGSQTAQAAPPASPHAAPTSVWVAPGG
CCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
PAAAPSPATQAPAGSPSPAQGANGASPAQGVTGSSPAQGATASSPAQGATGVLRPPPSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPLTTQPAPPMAAPAPVSPTPATAHGPVPTPPERSGAFAWPVRGTVLSGFGATPKGQHND
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCC
GINIAAPRGTPVTAAETGVVAYAGNEIRGFGNLLLIKHEGGFMTAYAHNDALLVKRGETV
CCEEECCCCCCCCHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCH
SRGQTIARVGSSGGVGAPQIHFEIRRNGKPIDPTPYLTGQKVASR
HCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SAPLPPLMPWRPIVGADQHPYSGAMTSSAQNISRPSPRLPSVRAAALTVALGLAVASCG
CCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCC
GGSSDFGPTPDSERQARSYTVAQGDTVYAVSRRFGIPVPAIIKENALSPPFILHIGQVLR
CCCCCCCCCCCCHHHHHEEEEECCCEEEEEHHHCCCCCCHHHHHCCCCCHHHHHHHHHHH
LPGQKIHTVARGDTLYSIAKRYSIDMNRLARLNAIDDTNLIKVGQALSIPGEEAPPSDGD
CCCHHEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCC
EALAATSIPVARESLPPPSAYPGAAAYPGTAAYPGSQTAQAAPPASPHAAPTSVWVAPGG
CCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
PAAAPSPATQAPAGSPSPAQGANGASPAQGVTGSSPAQGATASSPAQGATGVLRPPPSAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PPLTTQPAPPMAAPAPVSPTPATAHGPVPTPPERSGAFAWPVRGTVLSGFGATPKGQHND
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCC
GINIAAPRGTPVTAAETGVVAYAGNEIRGFGNLLLIKHEGGFMTAYAHNDALLVKRGETV
CCEEECCCCCCCCHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCH
SRGQTIARVGSSGGVGAPQIHFEIRRNGKPIDPTPYLTGQKVASR
HCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]