Click here to switch to the map view.

The map label for this gene is 83593094

Identifier: 83593094

GI number: 83593094

Start: 2052341

End: 2053189

Strand: Reverse

Name: 83593094

Synonym: Rru_A1759

Alternate gene names: NA

Gene position: 2053189-2052341 (Counterclockwise)

Preceding gene: 83593097

Following gene: 83593093

Centisome position: 47.17

GC content: 69.73

Gene sequence:

>849_bases
ATGGCCCAAGCCGAAGACCTCTCGCCGCTGGCCGGCGCGGTGCGCGACTTTGATCCCAACCGCTTTCAGACCGCGCTGTT
CGCTCCGGCTGAACAACGGGAAAATCTGATGGCGCTTTATGCCTTTAACGTCGAAATCGCCCGCATCGCCGAAACGGTCA
GCGAGGCTTTGATCGGCGAGATGCGTCTGCAATGGTGGCATGACCTGTGCGAGGGGGCCTTCAGCGGCGCGGTGATCGCC
CGCGGCCATCCGGTTGGCGAGGCGATGGAGCGGTTGATCGCCGGCGGCCGGCTTGACCGCCCGACGTTGAGCGCCGCCAT
CGCGGCGCGGCGGCTTGATCTCGCCGCCGAGCCCTTCGCCACCCCGGCCGATCTTCGCGGCTATGCCGAGGACACCGCCG
GCGGGCTGTCGAGGATGGCCGCCGCCCTGCTGGGCGCCGATCCGTCGACGATCGCCGCCGCCGGCCATGTGGGAACGGCC
TGGGGACTGCTCGGCGTGGTGCGGACGCTGTGCCCGATGGCCGCCCAGGGTCGCCTTTACCTGCCATCGCAGTTAGCCGA
CGAGCGCGGCGTCACCCGCGAGGATTTATCGGCGCCACCGGTCACGGAGGCGGCAAAGGCCCTATGCTTGGATCTGGTGG
GCGAGGTCGAGGACCTGTTGGCCGAGGCCCGGGCCCTGCGCCGGCGCATCGACCGCCGCCATCTCTCGCCGTTTCTGCTC
GCCCCGCTGGCCCGCCCCTATCTGGCCCTGTTGCGCCAAAGCGGCGGCGACCCGGCCGATCCCGGCCTGTGGACCATCGT
CCGCCGGCCGTTCTCGCTGTTCTGGACCGGGATAAGGGGCCGTATCTGA

Upstream 100 bases:

>100_bases
CCATTTATGGGGGTTCCCGACGAATTTGAAGGGGTATCGGGCAAAATCACCTGGGGCGCCCCCTCTTTACGCCCAACGGA
CCACGAAGAAGGACGTTCCG

Downstream 100 bases:

>100_bases
CGGCCGCGAAACCGCCTCCGGTCCGCTCCGACCGAAAAGGGGAGGGGGGCGGCGACTTTCTATCAAGACCCGGAAAAGAT
TGGGGATTCAAAGACTTGAA

Product: putative phytoene synthase protein

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Phytoene Synthase Protein; Phytoene/Squalene Synthetase; Phytoene Synthase Family Protein; Squalene Synthase HpnD; Squalene; Squalene And Phytoene Synthases Superfamily; Phytoene/Squalene Synthetase-Like Protein; Terpenoid Synthase

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MAQAEDLSPLAGAVRDFDPNRFQTALFAPAEQRENLMALYAFNVEIARIAETVSEALIGEMRLQWWHDLCEGAFSGAVIA
RGHPVGEAMERLIAGGRLDRPTLSAAIAARRLDLAAEPFATPADLRGYAEDTAGGLSRMAAALLGADPSTIAAAGHVGTA
WGLLGVVRTLCPMAAQGRLYLPSQLADERGVTREDLSAPPVTEAAKALCLDLVGEVEDLLAEARALRRRIDRRHLSPFLL
APLARPYLALLRQSGGDPADPGLWTIVRRPFSLFWTGIRGRI

Sequences:

>Translated_282_residues
MAQAEDLSPLAGAVRDFDPNRFQTALFAPAEQRENLMALYAFNVEIARIAETVSEALIGEMRLQWWHDLCEGAFSGAVIA
RGHPVGEAMERLIAGGRLDRPTLSAAIAARRLDLAAEPFATPADLRGYAEDTAGGLSRMAAALLGADPSTIAAAGHVGTA
WGLLGVVRTLCPMAAQGRLYLPSQLADERGVTREDLSAPPVTEAAKALCLDLVGEVEDLLAEARALRRRIDRRHLSPFLL
APLARPYLALLRQSGGDPADPGLWTIVRRPFSLFWTGIRGRI
>Mature_281_residues
AQAEDLSPLAGAVRDFDPNRFQTALFAPAEQRENLMALYAFNVEIARIAETVSEALIGEMRLQWWHDLCEGAFSGAVIAR
GHPVGEAMERLIAGGRLDRPTLSAAIAARRLDLAAEPFATPADLRGYAEDTAGGLSRMAAALLGADPSTIAAAGHVGTAW
GLLGVVRTLCPMAAQGRLYLPSQLADERGVTREDLSAPPVTEAAKALCLDLVGEVEDLLAEARALRRRIDRRHLSPFLLA
PLARPYLALLRQSGGDPADPGLWTIVRRPFSLFWTGIRGRI

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=251, Percent_Identity=25.0996015936255, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24641447, Length=278, Percent_Identity=25.1798561151079, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 30352; Mature: 30221

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAEDLSPLAGAVRDFDPNRFQTALFAPAEQRENLMALYAFNVEIARIAETVSEALIGE
CCCCCCCCHHHHHHHCCCCCHHHHHHCCCHHHHCCEEEEHEECHHHHHHHHHHHHHHHHH
MRLQWWHDLCEGAFSGAVIARGHPVGEAMERLIAGGRLDRPTLSAAIAARRLDLAAEPFA
HHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
TPADLRGYAEDTAGGLSRMAAALLGADPSTIAAAGHVGTAWGLLGVVRTLCPMAAQGRLY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
LPSQLADERGVTREDLSAPPVTEAAKALCLDLVGEVEDLLAEARALRRRIDRRHLSPFLL
CCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
APLARPYLALLRQSGGDPADPGLWTIVRRPFSLFWTGIRGRI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCC
>Mature Secondary Structure 
AQAEDLSPLAGAVRDFDPNRFQTALFAPAEQRENLMALYAFNVEIARIAETVSEALIGE
CCCCCCCHHHHHHHCCCCCHHHHHHCCCHHHHCCEEEEHEECHHHHHHHHHHHHHHHHH
MRLQWWHDLCEGAFSGAVIARGHPVGEAMERLIAGGRLDRPTLSAAIAARRLDLAAEPFA
HHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
TPADLRGYAEDTAGGLSRMAAALLGADPSTIAAAGHVGTAWGLLGVVRTLCPMAAQGRLY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
LPSQLADERGVTREDLSAPPVTEAAKALCLDLVGEVEDLLAEARALRRRIDRRHLSPFLL
CCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
APLARPYLALLRQSGGDPADPGLWTIVRRPFSLFWTGIRGRI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA