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The map label for this gene is yedU [C]

Identifier: 83593059

GI number: 83593059

Start: 2017171

End: 2017848

Strand: Direct

Name: yedU [C]

Synonym: Rru_A1724

Alternate gene names: 83593059

Gene position: 2017171-2017848 (Clockwise)

Preceding gene: 83593057

Following gene: 83593063

Centisome position: 46.34

GC content: 65.78

Gene sequence:

>678_bases
ATGAAGATCCTGATGGTACTGACGTCCCACGATCAATTGGGCGACAGCGAGCATAAGACCGGCTTCTGGCTTGAAGAAGT
CGCCGCGCCTTATTACGCCTTCCTTGATGCCGGGGCCGAAGTCACCTTGGCCTCGCCCAAAGGGGGGCAGCCGCCGCTTG
ATCCGCGCAGCGATGACGCCGGTGCCCAGACCGCCAGCACCGCCCGCTTCAAGGCCGATGTCGCCGCCACCGCCGCCCTG
GCCCATACCCAGCTTCTGGCCGAGGTCTCGGCGCAGGACTACGACGGCGTGTTTTATCCCGGCGGGCACGGCCCCTTATG
GGATCTGGCCGAGGATCCGACCTCGATCGCCCTGATCGAAGCCTTCGTCGCCGCCGACAAGCCGGTGGCGGCGGTCTGCC
ACGGTCCGGCCGCCCTGCGCCACGTCAAGGTCGGGGGAACCGTGCCTTTGGTCGAAGGCAAGCGGGTGACCGGCTTTTCC
AACAGCGAGGAGGATCAGGTCGGGCTGGCCAAGGTGGTGCCCTTCCTGATCGAAGACGAGTTCAAACGCCTGGGCGGCCA
TTATGAAAAGGCCGACGACTGGCAAAGCTTCGTCCTGACCGACGGCCTGCTGGTCACCGGGCAGAACCCCGCCTCGTCGG
AGGAGTCCGCCCGGGCCTTGTTGTCCCTGCTGGCTTAG

Upstream 100 bases:

>100_bases
GCCTTGGGGACCAGGGGGCAATCCCGCCCCCTTCCCTTCTCCCAGCCCAGCCCCCAAATCAAGGCGCGACACCGCGCGCA
AAAAGGGTTGGGAGAGACCA

Downstream 100 bases:

>100_bases
GGCCGCCGTCTCGTCTGGAGGCCCGTCCGCCTCTCTGGTTATTGGTCCTGGCTCTCGAGAATGATCCGGCGATGAAGGGC
CTGGGGCGGCCGGGCGTTCA

Product: ThiJ/PfpI

Products: NA

Alternate protein names: ThiJ/PfpI Domain Protein; ThiJ/PfpI Family Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; DJ-1/PfpI-Family Transcriptional Regulator; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; C56 Family Peptidase; Transcriptional Regulator; Amidotransferase; PFPI-Like Cystiene Protease; Protease I; Intracellular Protease Amidase; ThiJ/PfpI Protein; Regulatory Protein; ThiJ Protein; NonF Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Chaperone HchA; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Chaperone Protein HchA; Pfp1 Family Protein; Fis Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKILMVLTSHDQLGDSEHKTGFWLEEVAAPYYAFLDAGAEVTLASPKGGQPPLDPRSDDAGAQTASTARFKADVAATAAL
AHTQLLAEVSAQDYDGVFYPGGHGPLWDLAEDPTSIALIEAFVAADKPVAAVCHGPAALRHVKVGGTVPLVEGKRVTGFS
NSEEDQVGLAKVVPFLIEDEFKRLGGHYEKADDWQSFVLTDGLLVTGQNPASSEESARALLSLLA

Sequences:

>Translated_225_residues
MKILMVLTSHDQLGDSEHKTGFWLEEVAAPYYAFLDAGAEVTLASPKGGQPPLDPRSDDAGAQTASTARFKADVAATAAL
AHTQLLAEVSAQDYDGVFYPGGHGPLWDLAEDPTSIALIEAFVAADKPVAAVCHGPAALRHVKVGGTVPLVEGKRVTGFS
NSEEDQVGLAKVVPFLIEDEFKRLGGHYEKADDWQSFVLTDGLLVTGQNPASSEESARALLSLLA
>Mature_225_residues
MKILMVLTSHDQLGDSEHKTGFWLEEVAAPYYAFLDAGAEVTLASPKGGQPPLDPRSDDAGAQTASTARFKADVAATAAL
AHTQLLAEVSAQDYDGVFYPGGHGPLWDLAEDPTSIALIEAFVAADKPVAAVCHGPAALRHVKVGGTVPLVEGKRVTGFS
NSEEDQVGLAKVVPFLIEDEFKRLGGHYEKADDWQSFVLTDGLLVTGQNPASSEESARALLSLLA

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6320742, Length=229, Percent_Identity=34.9344978165939, Blast_Score=92, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6324967, Length=235, Percent_Identity=29.3617021276596, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324975, Length=235, Percent_Identity=29.3617021276596, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323984, Length=235, Percent_Identity=28.5106382978723, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23755; Mature: 23755

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILMVLTSHDQLGDSEHKTGFWLEEVAAPYYAFLDAGAEVTLASPKGGQPPLDPRSDDA
CEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
GAQTASTARFKADVAATAALAHTQLLAEVSAQDYDGVFYPGGHGPLWDLAEDPTSIALIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
AFVAADKPVAAVCHGPAALRHVKVGGTVPLVEGKRVTGFSNSEEDQVGLAKVVPFLIEDE
HHHHCCCCCEEEECCHHHHEEEECCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHH
FKRLGGHYEKADDWQSFVLTDGLLVTGQNPASSEESARALLSLLA
HHHHCCCCCCCHHHHHHHEECCEEEECCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MKILMVLTSHDQLGDSEHKTGFWLEEVAAPYYAFLDAGAEVTLASPKGGQPPLDPRSDDA
CEEEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
GAQTASTARFKADVAATAALAHTQLLAEVSAQDYDGVFYPGGHGPLWDLAEDPTSIALIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
AFVAADKPVAAVCHGPAALRHVKVGGTVPLVEGKRVTGFSNSEEDQVGLAKVVPFLIEDE
HHHHCCCCCEEEECCHHHHEEEECCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHH
FKRLGGHYEKADDWQSFVLTDGLLVTGQNPASSEESARALLSLLA
HHHHCCCCCCCHHHHHHHEECCEEEECCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA