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The map label for this gene is yecD [C]

Identifier: 83593056

GI number: 83593056

Start: 2014297

End: 2014854

Strand: Direct

Name: yecD [C]

Synonym: Rru_A1721

Alternate gene names: 83593056

Gene position: 2014297-2014854 (Clockwise)

Preceding gene: 83593055

Following gene: 83593057

Centisome position: 46.28

GC content: 66.85

Gene sequence:

>558_bases
ATGACCACCGCCCTGCTGATCATCGACGTGCAATGTGCGATCCTCGCCGGCCTCGCCCCGCCCGAGCGCCAGCCGGTGAT
CGACCTGGCCCTGGACGACACCGTCTGGCGCCTTCAGGCGCTCGGCCGCAAGGCCCATGCCGGCGGGGTGCCCGTTGTCC
TGGTTCAGCACGATGGCGCGGCCGGACACCGTCTGGCGGTCGGATCGCCGGGTTGGGCCCTGCGCCCGGAGATCGCGGCG
CGGGGCGGCGATATCGTGGTTCGCAAGCGCAGCTGTGACGCGTTTTTCCAGACCGATCTCCAAGATCGCCTAGCCACCCT
GGGGATCGACCATCTGGTGATCGGCGGCTGCATGACGCAGTTTTGCGTCGATACCACCGTGCGCCGCGCCGTATCGCTTG
GCTATGATGTCAGCTTGATCGCCGATGGTCATACGACGGCGGACCAGGGCGATCTCGGCTTTGCCCAGATCATCGCCCAC
CATAACACGACCCTTGATGGCTTCGATGCCGGAGCCCGCTCCACCCGGGTTTTGCCGGCGGCGGCCCTTTTCCTCTGA

Upstream 100 bases:

>100_bases
AAGAGATCATCGGCGCCGTGCTGATCGGCCTGCCCGCCGTTGGCGCCGGCGTGATCGAAGCCCTGCCGATCGCTTTGGAC
GCCTATGACCAGAGCGGACA

Downstream 100 bases:

>100_bases
CCGCACAGCCTGCCGACCGGGGACCCCATGCGGGATCGGACGGGGGACGTCGGCCGGGCCACCCTGAGGGAAGGATGCGA
GGACAATGGCGATCTCACGG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase; Amidase; Hydrolase; Nicotinamidase-Like Amidase; Acetyltransferase GNAT Family; GCN5-Related N-Acetyltransferase; 2 3-Dihydro-2 3-Dihydroxybenzoate Synthetase; Isochorismatase Hydrolase Protein; Acetyltransferase; Isochorismatase Protein; Isochorismatase Superfamily Hydrolase; Isochorismatase YecD; Isochorismatase-Like Protein; Streptothricin Hydrolase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTTALLIIDVQCAILAGLAPPERQPVIDLALDDTVWRLQALGRKAHAGGVPVVLVQHDGAAGHRLAVGSPGWALRPEIAA
RGGDIVVRKRSCDAFFQTDLQDRLATLGIDHLVIGGCMTQFCVDTTVRRAVSLGYDVSLIADGHTTADQGDLGFAQIIAH
HNTTLDGFDAGARSTRVLPAAALFL

Sequences:

>Translated_185_residues
MTTALLIIDVQCAILAGLAPPERQPVIDLALDDTVWRLQALGRKAHAGGVPVVLVQHDGAAGHRLAVGSPGWALRPEIAA
RGGDIVVRKRSCDAFFQTDLQDRLATLGIDHLVIGGCMTQFCVDTTVRRAVSLGYDVSLIADGHTTADQGDLGFAQIIAH
HNTTLDGFDAGARSTRVLPAAALFL
>Mature_184_residues
TTALLIIDVQCAILAGLAPPERQPVIDLALDDTVWRLQALGRKAHAGGVPVVLVQHDGAAGHRLAVGSPGWALRPEIAAR
GGDIVVRKRSCDAFFQTDLQDRLATLGIDHLVIGGCMTQFCVDTTVRRAVSLGYDVSLIADGHTTADQGDLGFAQIIAHH
NTTLDGFDAGARSTRVLPAAALFL

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081992, Length=159, Percent_Identity=32.0754716981132, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19523; Mature: 19391

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTALLIIDVQCAILAGLAPPERQPVIDLALDDTVWRLQALGRKAHAGGVPVVLVQHDGA
CCEEEEEEEEHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCC
AGHRLAVGSPGWALRPEIAARGGDIVVRKRSCDAFFQTDLQDRLATLGIDHLVIGGCMTQ
CCCEEEECCCCCEECCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
FCVDTTVRRAVSLGYDVSLIADGHTTADQGDLGFAQIIAHHNTTLDGFDAGARSTRVLPA
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH
AALFL
HHHCC
>Mature Secondary Structure 
TTALLIIDVQCAILAGLAPPERQPVIDLALDDTVWRLQALGRKAHAGGVPVVLVQHDGA
CEEEEEEEEHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCEEEEECCCC
AGHRLAVGSPGWALRPEIAARGGDIVVRKRSCDAFFQTDLQDRLATLGIDHLVIGGCMTQ
CCCEEEECCCCCEECCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
FCVDTTVRRAVSLGYDVSLIADGHTTADQGDLGFAQIIAHHNTTLDGFDAGARSTRVLPA
HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH
AALFL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA