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The map label for this gene is ycfH [H]

Identifier: 83593035

GI number: 83593035

Start: 1989989

End: 1990801

Strand: Reverse

Name: ycfH [H]

Synonym: Rru_A1700

Alternate gene names: 83593035

Gene position: 1990801-1989989 (Counterclockwise)

Preceding gene: 83593036

Following gene: 83593034

Centisome position: 45.74

GC content: 66.05

Gene sequence:

>813_bases
ATGATCGTCGATAGCCATTGCCACCTCGACTTCCCCGATTTCGCCCCCGATATCGACGCCGTGGTCGAGCGGGCGCGGAC
GGCCGGGGTTGGCACCATGCTGACCATCTGCACCCATGTCTCGCGCTTTCCCGGGGTGCTGGCGATGGCCGAGCGCTTTC
CCGATGTCTGGTGCACGGTGGGCATCCATCCCCATGAAGCCGCCAATGAGGCCGAGGTCGACGCCGAGACCCTGGTGCGG
CTGACCGAGAACCCCCGGGTCGTCGGCCTGGGGGAAACCGGGCTGGATTATTTCTATGACAACAGCCCGCGCGAGGCCCA
GCGGCGCAGTTTCCGCGCCCATCTGGCGGCGGGCCGCCTGAGCGGTCTGCCGGTGGTCATCCATACCCGCGACGCCGATG
CCGATACGGCGGCGATCTTGCGCGAGGAGCGCGAGAAGGGGCCGTTCAAGGCCCTGCTCCACTGCTTCAGCTCCGGTAAG
GATCTGGCTGATCTGGCGGTGGAAATGGGTCTTTATGTCTCGATGTCGGGGATCCTTACCTTCCCCAAGGCGGAGGACGT
GCGCACGGCCATCGCCGATGTGCCGCTTGACCGTCTGCTGGTCGAAACCGACGCGCCCTTCCTGGCGCCGACGCCTAAGC
GCGGCAAGCGCAATGAACCGGCCCTGGTCGTTCATACGGCGGCGAAACTGGCCGAGGTCAAGGGCGTGGCCGTTGAGGCG
TTGTGGGCGGCGACCACCGATAACTTCTTCACCCTCTTTGACAAATGCGCCCGCCCGACCGGATCCGCCCCGCAGACCGA
CGGAACCGTCTAG

Upstream 100 bases:

>100_bases
CGCCACGTGGTGGACGACGAGGGGGCGGCGTGAGCGCCCCCTTCCACCCTTGTTTTCTCCTAGTAGAGTAATGGATAGCC
ATGTCCCATGGTGGTCACCG

Downstream 100 bases:

>100_bases
ATGCGGATCAGGATTTTGGGCTGCGGCGGCGCGGCGGGAGTTCCCGCCATCGCCGCCGGATGGGGGGCCTGTGACCCGGG
CGAGCCGCGCAACCGCCGCC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMAERFPDVWCTVGIHPHEAANEAEVDAETLVR
LTENPRVVGLGETGLDYFYDNSPREAQRRSFRAHLAAGRLSGLPVVIHTRDADADTAAILREEREKGPFKALLHCFSSGK
DLADLAVEMGLYVSMSGILTFPKAEDVRTAIADVPLDRLLVETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEA
LWAATTDNFFTLFDKCARPTGSAPQTDGTV

Sequences:

>Translated_270_residues
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMAERFPDVWCTVGIHPHEAANEAEVDAETLVR
LTENPRVVGLGETGLDYFYDNSPREAQRRSFRAHLAAGRLSGLPVVIHTRDADADTAAILREEREKGPFKALLHCFSSGK
DLADLAVEMGLYVSMSGILTFPKAEDVRTAIADVPLDRLLVETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEA
LWAATTDNFFTLFDKCARPTGSAPQTDGTV
>Mature_270_residues
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMAERFPDVWCTVGIHPHEAANEAEVDAETLVR
LTENPRVVGLGETGLDYFYDNSPREAQRRSFRAHLAAGRLSGLPVVIHTRDADADTAAILREEREKGPFKALLHCFSSGK
DLADLAVEMGLYVSMSGILTFPKAEDVRTAIADVPLDRLLVETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEA
LWAATTDNFFTLFDKCARPTGSAPQTDGTV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=30.9963099630996, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI226061853, Length=279, Percent_Identity=31.8996415770609, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=30.9963099630996, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=31.25, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI225903424, Length=204, Percent_Identity=31.8627450980392, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI226061595, Length=238, Percent_Identity=30.2521008403361, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI14042943, Length=247, Percent_Identity=23.8866396761134, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI225903439, Length=217, Percent_Identity=24.4239631336406, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=46.360153256705, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=32.9411764705882, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=34.3629343629344, Blast_Score=135, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17559024, Length=213, Percent_Identity=30.0469483568075, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=26.7175572519084, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=214, Percent_Identity=30.3738317757009, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=291, Percent_Identity=26.4604810996564, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24648690, Length=222, Percent_Identity=32.4324324324324, Blast_Score=104, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29275; Mature: 29275

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMAERFPDVWCTV
CEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEE
GIHPHEAANEAEVDAETLVRLTENPRVVGLGETGLDYFYDNSPREAQRRSFRAHLAAGRL
CCCCCCCCCCHHCCHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHCCC
SGLPVVIHTRDADADTAAILREEREKGPFKALLHCFSSGKDLADLAVEMGLYVSMSGILT
CCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
FPKAEDVRTAIADVPLDRLLVETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEA
CCCHHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCCHHHHH
LWAATTDNFFTLFDKCARPTGSAPQTDGTV
HHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMAERFPDVWCTV
CEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEE
GIHPHEAANEAEVDAETLVRLTENPRVVGLGETGLDYFYDNSPREAQRRSFRAHLAAGRL
CCCCCCCCCCHHCCHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHCCC
SGLPVVIHTRDADADTAAILREEREKGPFKALLHCFSSGKDLADLAVEMGLYVSMSGILT
CCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHEEECCEEE
FPKAEDVRTAIADVPLDRLLVETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEA
CCCHHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCCHHHHH
LWAATTDNFFTLFDKCARPTGSAPQTDGTV
HHHHCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]