Click here to switch to the map view.

The map label for this gene is 83593004

Identifier: 83593004

GI number: 83593004

Start: 1959133

End: 1959858

Strand: Direct

Name: 83593004

Synonym: Rru_A1669

Alternate gene names: NA

Gene position: 1959133-1959858 (Clockwise)

Preceding gene: 83593003

Following gene: 83593005

Centisome position: 45.01

GC content: 67.08

Gene sequence:

>726_bases
GTGATCCCTCCCAGCCCGACACTCGAGCCAGCGGACGATGGCGATGGGGCGCGCCGCGGCAAGTCCGAGTCCGCCTTTCG
CACGATCAGCGAGGTTTCGGCCGATCTGGGCGTTCCTCAGCATGTTCTGCGGTTCTGGGAAACCAAGTTTTCGCAGATCA
GGCCGATGAAACGGGGCGGTGGCCGGCGCTATTACCGACCCGAAGACGTCATCCTGCTCGCCGCGATTCGCGACCTTCTT
TACAATGATGGCTATACCATCAAGGGGGCGCAGAAGCTGCTGCGCGAAAACGGCGTCAAAAGCGTCATCTCGCAAACCCT
GGGCATCGGTGCCGAGACCACCGCCGCGATCGGGGCGGAGGACGACGAGGCGGACAGGCCGGATGCGTCCGAACCCGAGG
AGGCCCTCGCCGGGCACGACGCCCCCTTCGACGACGCGGCGGAGGGCGAGGGCGATGAGGATCGCTCCCCCTATCCCGAC
CCGCTCGAGGCCGACGGCGACCTGCTGGACGGCGACGATGAGGACGATTCCCTTGGCGAGCTCGACGATCCGGCCGACGA
GGGGGGCGAAGAGGCTCCGTCCGTGCCACCGCTTGCGCAGGCCGCCGAGCCGGTCGCTCCGGTGGTGGTGGTGGCGGGAT
TGAGCCCGAGCCAGCGTCGTGAGCTTTTGGCCGTGCTGGCCGAACTGGAGGATCTGCGGCGGATTTTGCAGCAGGCCGAG
CTGTAA

Upstream 100 bases:

>100_bases
CATCCTGCCCCGGCGGGTTCTGGTATTCCGCCCCTCGCAACTGCTTAAGGCGCGCATTAACGACGGCGCGGTAGGCAGCC
AGATCAACGGATAACAGGTT

Downstream 100 bases:

>100_bases
AAGCGCCGCGGGGCGGGCGACAGAAGGTCTGCTGAAATAATTTGGTTTTCTTCTTGCAGAGCCGATGAGGCATGGCTATA
TTGCCGCCTCTTCGCGGGGC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKFSQIRPMKRGGGRRYYRPEDVILLAAIRDLL
YNDGYTIKGAQKLLRENGVKSVISQTLGIGAETTAAIGAEDDEADRPDASEPEEALAGHDAPFDDAAEGEGDEDRSPYPD
PLEADGDLLDGDDEDDSLGELDDPADEGGEEAPSVPPLAQAAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAE
L

Sequences:

>Translated_241_residues
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKFSQIRPMKRGGGRRYYRPEDVILLAAIRDLL
YNDGYTIKGAQKLLRENGVKSVISQTLGIGAETTAAIGAEDDEADRPDASEPEEALAGHDAPFDDAAEGEGDEDRSPYPD
PLEADGDLLDGDDEDDSLGELDDPADEGGEEAPSVPPLAQAAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAE
L
>Mature_241_residues
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKFSQIRPMKRGGGRRYYRPEDVILLAAIRDLL
YNDGYTIKGAQKLLRENGVKSVISQTLGIGAETTAAIGAEDDEADRPDASEPEEALAGHDAPFDDAAEGEGDEDRSPYPD
PLEADGDLLDGDDEDDSLGELDDPADEGGEEAPSVPPLAQAAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAE
L

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 25838; Mature: 25838

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKFSQIRPMKRGG
CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCC
GRRYYRPEDVILLAAIRDLLYNDGYTIKGAQKLLRENGVKSVISQTLGIGAETTAAIGAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCCC
DDEADRPDASEPEEALAGHDAPFDDAAEGEGDEDRSPYPDPLEADGDLLDGDDEDDSLGE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LDDPADEGGEEAPSVPPLAQAAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAE
CCCCHHCCCCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKFSQIRPMKRGG
CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCC
GRRYYRPEDVILLAAIRDLLYNDGYTIKGAQKLLRENGVKSVISQTLGIGAETTAAIGAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCCC
DDEADRPDASEPEEALAGHDAPFDDAAEGEGDEDRSPYPDPLEADGDLLDGDDEDDSLGE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LDDPADEGGEEAPSVPPLAQAAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAE
CCCCHHCCCCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1961742 [H]