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The map label for this gene is yciR [C]

Identifier: 83592988

GI number: 83592988

Start: 1944353

End: 1945654

Strand: Direct

Name: yciR [C]

Synonym: Rru_A1653

Alternate gene names: 83592988

Gene position: 1944353-1945654 (Clockwise)

Preceding gene: 83592984

Following gene: 83592989

Centisome position: 44.67

GC content: 65.75

Gene sequence:

>1302_bases
ATGCTGTTTGACAGGACCATCGATGTCCTTCTTGTCGAAGACAATCCCGGTGACAGCCGGCTGATTCAGATCAACCTGTC
CGAACAGCATGAGGTGCGCTTCCGCGTGCGGGTCTGCGAGGATCTGGCCAGCGCCTGCGCGTGCCTTGCCTCCGCCCGCT
TCGATGTCGTGCTTCTCGATCTTTTTTTGCCCGATAGCCAGGGGCTGCGCACGCTTGAGCGGCTGATGGTCGCCACCAAC
GAGATCCCGGTGGTGGTGATGTCGGGGCTTGATGATTTCACCACCGCCATGCAGGCGGTTCAGCAGGGCGCCCAGGACTA
TCTGGTCAAGGGCAAGGGCGATGGCGAACTGGTCCGCCGGGCGATCTTGCACGCCATCGAACGCCAGCGCTTTCGCCGCC
AGTTGCTGATGGCGGAAGCGGCCTTTCGTCATACGGACACCGGGATGATGGTGACCGATGCCCATGGCGTGGTCGTCCGC
GTCAATCCGGCCTTCCTCGATGTGACCGGCTATGGCGCCGACGAGGTGGTCGGCCGGATGGCGCCGTTCCTGCGTTCGGA
TGTTCACGACGGCGATTTTTACCGCGACATCTGGAAGCGCCTGGGCGAGACCTCGACCTGGGAGGGCGAGATCTGGACGC
GCCGCCGCAATGGCGAGATCGCCCCGGACTGGTTGCGGATCAATGGCGTCACCGATCCGAGCGGCGGGGTCGTCGGCTAT
GTCGTGGTCTTTTCCGACATCACCTTCCGCCGCCGGGCCGAGGAGGAGCTGGTCCGTCAGGCGACCACCGATCCGCTGAC
CGGCCTGCCCAATCGCGCCCTTTTCCAGAAGCTTCTGGTCTCGGGCCTCGAACGGGCCCGGCGTTATGACCGCCATCTTG
GTTTGTTGTTCGTCGATATCGACGGCTTCAAACAGGTCAACGACCGCTTCGGACACGAGGGCGGCGACGAGGTGCTGCGC
GAGGTCGCCCGCCGCTTGCGCCGCGCCGTGCGGGTATCGGACGAGGTCGCCCGCCTGGGGGGCGACGAGTTCACCTTGCT
GCTAAGCGAGGTCAAGGCGGAAAGCGATGTCGAAACCGTCGCGGCCAAGGTGGTCCAGGTTCTGGGCGAGGCCTTTTCGA
TCGAGGATCAGCCGCTGGTCCTGTCGGCGAGCGTCGGGGTCGCCCTTTCGCCCGCCGACGGCCGCGACGCCGAAAGCCTG
CTGCGCGCCGCCGACGAGGCCATGTACCGGGCCAAGCGCGGCGGCAAGAACCGCTATGCCCTGGCCTCGGCCGCCCCGGG
TCAAACGCCGCCGCCCCGATAA

Upstream 100 bases:

>100_bases
ATTGATTTGGCGCGCACACCCTGATCCGAAGGCAAGAAAAGCAGAGCGGCGAGAGCCGGGAAACCGGTCTTCCTTCGCGC
TGGCCACCCCAGGGGGATGC

Downstream 100 bases:

>100_bases
CCCCCCGCCTTACAAGGGAGTTGCGGTGTGGACGAAAAGCGAGGTAAGACGGGGCGTTGGCTCATGGCTTTGCCCGATGG
GTAAAAAAGGACCCGCTAAT

Product: guanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLASARFDVVLLDLFLPDSQGLRTLERLMVATN
EIPVVVMSGLDDFTTAMQAVQQGAQDYLVKGKGDGELVRRAILHAIERQRFRRQLLMAEAAFRHTDTGMMVTDAHGVVVR
VNPAFLDVTGYGADEVVGRMAPFLRSDVHDGDFYRDIWKRLGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGY
VVVFSDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDIDGFKQVNDRFGHEGGDEVLR
EVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETVAAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESL
LRAADEAMYRAKRGGKNRYALASAAPGQTPPPR

Sequences:

>Translated_433_residues
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLASARFDVVLLDLFLPDSQGLRTLERLMVATN
EIPVVVMSGLDDFTTAMQAVQQGAQDYLVKGKGDGELVRRAILHAIERQRFRRQLLMAEAAFRHTDTGMMVTDAHGVVVR
VNPAFLDVTGYGADEVVGRMAPFLRSDVHDGDFYRDIWKRLGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGY
VVVFSDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDIDGFKQVNDRFGHEGGDEVLR
EVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETVAAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESL
LRAADEAMYRAKRGGKNRYALASAAPGQTPPPR
>Mature_433_residues
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLASARFDVVLLDLFLPDSQGLRTLERLMVATN
EIPVVVMSGLDDFTTAMQAVQQGAQDYLVKGKGDGELVRRAILHAIERQRFRRQLLMAEAAFRHTDTGMMVTDAHGVVVR
VNPAFLDVTGYGADEVVGRMAPFLRSDVHDGDFYRDIWKRLGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGY
VVVFSDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDIDGFKQVNDRFGHEGGDEVLR
EVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETVAAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESL
LRAADEAMYRAKRGGKNRYALASAAPGQTPPPR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=299, Percent_Identity=31.7725752508361, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788381, Length=267, Percent_Identity=31.4606741573034, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=36.0824742268041, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081977, Length=263, Percent_Identity=30.7984790874525, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=37.2670807453416, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=37.7049180327869, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=37.5690607734807, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=31.25, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=36.2573099415205, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=184, Percent_Identity=33.1521739130435, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=34.3373493975904, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=30.6748466257669, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=185, Percent_Identity=24.3243243243243, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081921, Length=175, Percent_Identity=28, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787056, Length=123, Percent_Identity=34.9593495934959, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 48116; Mature: 48116

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLASARFDVVLLD
CCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LFLPDSQGLRTLERLMVATNEIPVVVMSGLDDFTTAMQAVQQGAQDYLVKGKGDGELVRR
EECCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHCEEECCCCHHHHHH
AILHAIERQRFRRQLLMAEAAFRHTDTGMMVTDAHGVVVRVNPAFLDVTGYGADEVVGRM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCEEEEEECCCHHHHHHHH
APFLRSDVHDGDFYRDIWKRLGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGY
HHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEE
VVVFSDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDI
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DGFKQVNDRFGHEGGDEVLREVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETV
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
AAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESLLRAADEAMYRAKRGGKNRYA
HHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
LASAAPGQTPPPR
EEECCCCCCCCCC
>Mature Secondary Structure
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLASARFDVVLLD
CCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
LFLPDSQGLRTLERLMVATNEIPVVVMSGLDDFTTAMQAVQQGAQDYLVKGKGDGELVRR
EECCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCHHCEEECCCCHHHHHH
AILHAIERQRFRRQLLMAEAAFRHTDTGMMVTDAHGVVVRVNPAFLDVTGYGADEVVGRM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCEEEEEECCCHHHHHHHH
APFLRSDVHDGDFYRDIWKRLGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGY
HHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCEEEE
VVVFSDITFRRRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDI
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
DGFKQVNDRFGHEGGDEVLREVARRLRRAVRVSDEVARLGGDEFTLLLSEVKAESDVETV
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
AAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESLLRAADEAMYRAKRGGKNRYA
HHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
LASAAPGQTPPPR
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]