| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is kefA [H]
Identifier: 83592943
GI number: 83592943
Start: 1901090
End: 1903696
Strand: Direct
Name: kefA [H]
Synonym: Rru_A1608
Alternate gene names: 83592943
Gene position: 1901090-1903696 (Clockwise)
Preceding gene: 83592942
Following gene: 83592944
Centisome position: 43.67
GC content: 66.78
Gene sequence:
>2607_bases ATGCGGTGCGTATGGGCGGCGGTAGCCGCCGTGTTCTGTCTTGTCGCCGTGGCCTTGCCGGTCTCGGCGCAGACCTCCCC GGGCCCGGCGGCGACCACGGCCGCCGCCGCTCCGGAAGTCCCGGTGCTCGACCGCCTCAAAAAGGCGGCGGCGACCTGGG AACCGACGCTCAATGACGTCGACAAGCGGCTGAATCGGCCGCTCTCGGGACGGGACGCCGAAACCCTTGACGCTCTGGCG TCCCGGCTGCGCGCCGTGCGCGACGAGGCGGTGCTGTTTCGGCAGGCCGCCACCGATCGCTTGGCCGAGACCGAAAAGCT GATCGAGGCCCTGGGGCCGCCGCCGAAAGACGGCGAGGGCGAAGAAGCCAAGGATATGAAGGCCCGCCGCCAGTCCTATA CGGATTTGCTGGGGACGTGGAAATCCCGTCAGGCCGATATCGAGGTCAGCGCCGCCCGCGCCGAGACCCTGCTCAACCGC ATCTCGGAAATCCGGCGCCGCACCCTGGTGACCAGCCTCTTCGATCCGACTCCGCTGCCCTGGATGCCCGATGTTCTGGC CCAGGGGGGGCCGGAGTTGATCGACGGGCTGGTGGCCATCGCCGCTTCGCCGGTGAATTGGTACCAGTCGGGGGACGAAG CCGATCGCCGCAAGGCGGCCTTCAACGCCATCGGCGTCTGGATCATCCTGGCCGGTGGAACCGGCTGGGTGGTGCGTTGG TGGGTGCAACGGCGCTTCGGCCGCCGCCCCGATATCGAAAATCCGCCCTATGGCCGGCGGCTGATCGCCGCCCTGGCCGA AGCCACCGCCGAGGGCATCATTCCCGCCCTGGTGCTGGGCGGCATGATCGCCTGGATCACCAAGACCTGGACCGACGATC AGGGCTTGTTCACCCGCGTCATGCTCGGCGGCCTGTTCAATGTCTTGCTTGTTCTCATCACCCGGGCGGTGACGCGGGCG GCGCTATCCCCGGGTCTGCCGTCCTGGCGGCTGACCGACCACGGCGATCAGCAGGCCTCGAAGCTCGCCCATATCGTCGT CGTCCTGGCGATGGTGGTGGCGGTCGACCGCTTCATGACCGGCCTCGCCGGTGACATGCCGCCCTCCGACGCCTCGACCT GGATCGTCTCGGCGCTGTTCAAGCTGTTTGAGGGACTGATCCTCATCCGGCTGAGCAATGCCGATCTGTGGGCGCGGCCC AAGCCCGAGGACGGGGCCGAAGACGGCGCTCCCAAGGTCCAGCCGCTGGCCACGCCCTCCCAGGAGGACGACGAGGCCAA GGCGGGCGAGGGGGCTTTCCGCCTGTTGCTGCTGCTGGTGCGTCTGGCCGTCATGCTGGTCACCGTGGTCGGCATGATGG CCGGTCTGGTCGGTTATGGCCGTTTGGGCATCTTCCTGATCGACGGCCTGCTGGCCACCTGCGCCATTCTTGGCGCCGCC CTGGTGCTGCGCGGCCTTCTTCATGAACTGATCGGCGTCGCCGTCACTTGGTCGTGGCTGCGTGACCGGGCTGGGTATGA AGGTCCGTCGCTCAACAAGATGAAGTTCTGGCTGCAGGCGCTGTTCGATCCGCTGCTCATCGTGGGCGTGGTGATGGTGG CCTCGCCCAGTTGGGGGGTGCCCTGGCGCGATGTTCTGGACGGCACGGTGACCTTGCTCACCGGCGTCACCATCGGCAGC GTCCGCATCTCCATCGTCGATATCGCCGTTGGCATCCTGGTCTTCCTGGTCGCCATGGCGATCACCCGGGTGGCCCAGGG CACCTTGCAGCGCAAGGTGTTGAGCCAAACCGGCATGGACGCCGGGGTGCGCCACTCGCTGACGGCGGTGCTCGGCTATA TCGGATTGGTCGCCGCCGCCGCCCTGGCGGTGGGAACCATGGGCATCGACCTGACCAACATCGCCCTGATCGCCGGCGCG TTGTCGGTGGGTATCGGTTTTGGTTTGCAAAACATCGTCAACAACTTCGTCTCGGGTTTGATCATTTTGGTCGAGCGCCC GGTGAAGGTTGGCGACTGGGTGATCATCGGCTCGCATGAGGGTCTGGTGAAGCGCATCAGTTTCCGCGCGACCGAGCTTG AGACCTTTACCCAGGCCTCGGTGGTTATCCCCAACGCCGAAATCCTGTCCTCGCCGTTCACCAACCTCACCTTGCGCAAT CGCCTGGGACGCATCGACGTCAGCGTCCTGGTGATTATGAACAGCGATACCCGCAAGGTCCGCGACCTGTTGCTCGAGAT CGCCCGGGCCCATCCCCAGGTGCTGACCCTGCCCGCGCCCTGGGTGGTGCTCAAGGCTTTCGCCGATACCGGGCTCGAAT TCGAGGTGCGGAGCTATACCTCGAACGTGATGAACCGGGGCACGATCGCCAGCGACATGCGCCTTGAGATCGATCGCCGC TTCCGCGAGGAGGGGGTGATCATGCCCGCTCCGCTGCGGCCGATCATCACCCCGGGCACCGGCTCCGTCGAACAGACGGC GGCCGACCATGATCTGCCCGCCGGCGCGCGGCCGGTCGAGGAAAAGCCGGTGGCCGAAAGCAAGCCGGTCGAGGTGAAAA AGCCCGCGGCTGGCGGCCGACCGGCCACGACCGGCGACAGCCGTTGA
Upstream 100 bases:
>100_bases TGGCGGTGGAGGCTTTGGAGGTGGACGGAAGGCTGGGCCGTCTGGCATGTATCCTGGCGTCCCACGGACGGGGGGCGGCA GCAAAAAGGTAAAGAAGACC
Downstream 100 bases:
>100_bases GTCTGTCCGATCAGGGGGGTAGTCTCTTGCTATCCCCCTGGCGGCGGGGCATTCGGGCCTCGCCCCGGTTCTAAAGAGGA TCGGACATGCCCTTTATCGC
Product: MscS mechanosensitive ion channel
Products: NA
Alternate protein names: Protein AefA [H]
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MRCVWAAVAAVFCLVAVALPVSAQTSPGPAATTAAAAPEVPVLDRLKKAAATWEPTLNDVDKRLNRPLSGRDAETLDALA SRLRAVRDEAVLFRQAATDRLAETEKLIEALGPPPKDGEGEEAKDMKARRQSYTDLLGTWKSRQADIEVSAARAETLLNR ISEIRRRTLVTSLFDPTPLPWMPDVLAQGGPELIDGLVAIAASPVNWYQSGDEADRRKAAFNAIGVWIILAGGTGWVVRW WVQRRFGRRPDIENPPYGRRLIAALAEATAEGIIPALVLGGMIAWITKTWTDDQGLFTRVMLGGLFNVLLVLITRAVTRA ALSPGLPSWRLTDHGDQQASKLAHIVVVLAMVVAVDRFMTGLAGDMPPSDASTWIVSALFKLFEGLILIRLSNADLWARP KPEDGAEDGAPKVQPLATPSQEDDEAKAGEGAFRLLLLLVRLAVMLVTVVGMMAGLVGYGRLGIFLIDGLLATCAILGAA LVLRGLLHELIGVAVTWSWLRDRAGYEGPSLNKMKFWLQALFDPLLIVGVVMVASPSWGVPWRDVLDGTVTLLTGVTIGS VRISIVDIAVGILVFLVAMAITRVAQGTLQRKVLSQTGMDAGVRHSLTAVLGYIGLVAAAALAVGTMGIDLTNIALIAGA LSVGIGFGLQNIVNNFVSGLIILVERPVKVGDWVIIGSHEGLVKRISFRATELETFTQASVVIPNAEILSSPFTNLTLRN RLGRIDVSVLVIMNSDTRKVRDLLLEIARAHPQVLTLPAPWVVLKAFADTGLEFEVRSYTSNVMNRGTIASDMRLEIDRR FREEGVIMPAPLRPIITPGTGSVEQTAADHDLPAGARPVEEKPVAESKPVEVKKPAAGGRPATTGDSR
Sequences:
>Translated_868_residues MRCVWAAVAAVFCLVAVALPVSAQTSPGPAATTAAAAPEVPVLDRLKKAAATWEPTLNDVDKRLNRPLSGRDAETLDALA SRLRAVRDEAVLFRQAATDRLAETEKLIEALGPPPKDGEGEEAKDMKARRQSYTDLLGTWKSRQADIEVSAARAETLLNR ISEIRRRTLVTSLFDPTPLPWMPDVLAQGGPELIDGLVAIAASPVNWYQSGDEADRRKAAFNAIGVWIILAGGTGWVVRW WVQRRFGRRPDIENPPYGRRLIAALAEATAEGIIPALVLGGMIAWITKTWTDDQGLFTRVMLGGLFNVLLVLITRAVTRA ALSPGLPSWRLTDHGDQQASKLAHIVVVLAMVVAVDRFMTGLAGDMPPSDASTWIVSALFKLFEGLILIRLSNADLWARP KPEDGAEDGAPKVQPLATPSQEDDEAKAGEGAFRLLLLLVRLAVMLVTVVGMMAGLVGYGRLGIFLIDGLLATCAILGAA LVLRGLLHELIGVAVTWSWLRDRAGYEGPSLNKMKFWLQALFDPLLIVGVVMVASPSWGVPWRDVLDGTVTLLTGVTIGS VRISIVDIAVGILVFLVAMAITRVAQGTLQRKVLSQTGMDAGVRHSLTAVLGYIGLVAAAALAVGTMGIDLTNIALIAGA LSVGIGFGLQNIVNNFVSGLIILVERPVKVGDWVIIGSHEGLVKRISFRATELETFTQASVVIPNAEILSSPFTNLTLRN RLGRIDVSVLVIMNSDTRKVRDLLLEIARAHPQVLTLPAPWVVLKAFADTGLEFEVRSYTSNVMNRGTIASDMRLEIDRR FREEGVIMPAPLRPIITPGTGSVEQTAADHDLPAGARPVEEKPVAESKPVEVKKPAAGGRPATTGDSR >Mature_868_residues MRCVWAAVAAVFCLVAVALPVSAQTSPGPAATTAAAAPEVPVLDRLKKAAATWEPTLNDVDKRLNRPLSGRDAETLDALA SRLRAVRDEAVLFRQAATDRLAETEKLIEALGPPPKDGEGEEAKDMKARRQSYTDLLGTWKSRQADIEVSAARAETLLNR ISEIRRRTLVTSLFDPTPLPWMPDVLAQGGPELIDGLVAIAASPVNWYQSGDEADRRKAAFNAIGVWIILAGGTGWVVRW WVQRRFGRRPDIENPPYGRRLIAALAEATAEGIIPALVLGGMIAWITKTWTDDQGLFTRVMLGGLFNVLLVLITRAVTRA ALSPGLPSWRLTDHGDQQASKLAHIVVVLAMVVAVDRFMTGLAGDMPPSDASTWIVSALFKLFEGLILIRLSNADLWARP KPEDGAEDGAPKVQPLATPSQEDDEAKAGEGAFRLLLLLVRLAVMLVTVVGMMAGLVGYGRLGIFLIDGLLATCAILGAA LVLRGLLHELIGVAVTWSWLRDRAGYEGPSLNKMKFWLQALFDPLLIVGVVMVASPSWGVPWRDVLDGTVTLLTGVTIGS VRISIVDIAVGILVFLVAMAITRVAQGTLQRKVLSQTGMDAGVRHSLTAVLGYIGLVAAAALAVGTMGIDLTNIALIAGA LSVGIGFGLQNIVNNFVSGLIILVERPVKVGDWVIIGSHEGLVKRISFRATELETFTQASVVIPNAEILSSPFTNLTLRN RLGRIDVSVLVIMNSDTRKVRDLLLEIARAHPQVLTLPAPWVVLKAFADTGLEFEVRSYTSNVMNRGTIASDMRLEIDRR FREEGVIMPAPLRPIITPGTGSVEQTAADHDLPAGARPVEEKPVAESKPVEVKKPAAGGRPATTGDSR
Specific function: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell, although it does not appear to have a major role in osmolarity regulation. Form
COG id: COG3264
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI1786670, Length=252, Percent_Identity=37.3015873015873, Blast_Score=162, Evalue=6e-41, Organism=Escherichia coli, GI2367355, Length=249, Percent_Identity=28.5140562248996, Blast_Score=127, Evalue=5e-30, Organism=Escherichia coli, GI1789291, Length=247, Percent_Identity=25.5060728744939, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR006686 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 93292; Mature: 93292
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00421 TM4_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCVWAAVAAVFCLVAVALPVSAQTSPGPAATTAAAAPEVPVLDRLKKAAATWEPTLNDV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHHH DKRLNRPLSGRDAETLDALASRLRAVRDEAVLFRQAATDRLAETEKLIEALGPPPKDGEG HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EEAKDMKARRQSYTDLLGTWKSRQADIEVSAARAETLLNRISEIRRRTLVTSLFDPTPLP CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC WMPDVLAQGGPELIDGLVAIAASPVNWYQSGDEADRRKAAFNAIGVWIILAGGTGWVVRW CCHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEEEECCCHHHHHH WVQRRFGRRPDIENPPYGRRLIAALAEATAEGIIPALVLGGMIAWITKTWTDDQGLFTRV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH MLGGLFNVLLVLITRAVTRAALSPGLPSWRLTDHGDQQASKLAHIVVVLAMVVAVDRFMT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GLAGDMPPSDASTWIVSALFKLFEGLILIRLSNADLWARPKPEDGAEDGAPKVQPLATPS HHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC QEDDEAKAGEGAFRLLLLLVRLAVMLVTVVGMMAGLVGYGRLGIFLIDGLLATCAILGAA CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLRGLLHELIGVAVTWSWLRDRAGYEGPSLNKMKFWLQALFDPLLIVGVVMVASPSWGV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PWRDVLDGTVTLLTGVTIGSVRISIVDIAVGILVFLVAMAITRVAQGTLQRKVLSQTGMD CHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AGVRHSLTAVLGYIGLVAAAALAVGTMGIDLTNIALIAGALSVGIGFGLQNIVNNFVSGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IILVERPVKVGDWVIIGSHEGLVKRISFRATELETFTQASVVIPNAEILSSPFTNLTLRN HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHHCCCCCHHHHH RLGRIDVSVLVIMNSDTRKVRDLLLEIARAHPQVLTLPAPWVVLKAFADTGLEFEVRSYT HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCEEHHHHH SNVMNRGTIASDMRLEIDRRFREEGVIMPAPLRPIITPGTGSVEQTAADHDLPAGARPVE HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCC EKPVAESKPVEVKKPAAGGRPATTGDSR CCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRCVWAAVAAVFCLVAVALPVSAQTSPGPAATTAAAAPEVPVLDRLKKAAATWEPTLNDV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCHHHH DKRLNRPLSGRDAETLDALASRLRAVRDEAVLFRQAATDRLAETEKLIEALGPPPKDGEG HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC EEAKDMKARRQSYTDLLGTWKSRQADIEVSAARAETLLNRISEIRRRTLVTSLFDPTPLP CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC WMPDVLAQGGPELIDGLVAIAASPVNWYQSGDEADRRKAAFNAIGVWIILAGGTGWVVRW CCHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEEEECCCHHHHHH WVQRRFGRRPDIENPPYGRRLIAALAEATAEGIIPALVLGGMIAWITKTWTDDQGLFTRV HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH MLGGLFNVLLVLITRAVTRAALSPGLPSWRLTDHGDQQASKLAHIVVVLAMVVAVDRFMT HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GLAGDMPPSDASTWIVSALFKLFEGLILIRLSNADLWARPKPEDGAEDGAPKVQPLATPS HHCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC QEDDEAKAGEGAFRLLLLLVRLAVMLVTVVGMMAGLVGYGRLGIFLIDGLLATCAILGAA CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLRGLLHELIGVAVTWSWLRDRAGYEGPSLNKMKFWLQALFDPLLIVGVVMVASPSWGV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PWRDVLDGTVTLLTGVTIGSVRISIVDIAVGILVFLVAMAITRVAQGTLQRKVLSQTGMD CHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AGVRHSLTAVLGYIGLVAAAALAVGTMGIDLTNIALIAGALSVGIGFGLQNIVNNFVSGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IILVERPVKVGDWVIIGSHEGLVKRISFRATELETFTQASVVIPNAEILSSPFTNLTLRN HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCEEECCCHHHHHCCCCCHHHHH RLGRIDVSVLVIMNSDTRKVRDLLLEIARAHPQVLTLPAPWVVLKAFADTGLEFEVRSYT HCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCEEHHHHH SNVMNRGTIASDMRLEIDRRFREEGVIMPAPLRPIITPGTGSVEQTAADHDLPAGARPVE HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCC EKPVAESKPVEVKKPAAGGRPATTGDSR CCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 10202137 [H]